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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttgaaggtacaactgttttgggttccttttgatgtgaattatttggttgtcaaaaaagaactcatccttgctgctgtgatttattttgcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGCATTACTCTACAG

Basic information

species Zea mays
transcript GRMZM2G052750_T01
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G052750_T02 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os02g54500.1 (Oryza sativa), 3'ss of exon 20
tttttgaaggtacaactgttttgggttccttttg-atgtgaattatttggt----tgtcaaaaaagaactcatccttgctgctgtgatttattttgcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGCATTACTCTACAG
 |  | |   |     | |||||| ||  |        |  ||||||   |    ||| | ||    |||||||||||||||    ||   || |  || || |||||||||||||||||||| | |||||||||||| ||||||||||||||| ||| ||  |||||
-tcctcattttg----ttttttggatttttaccatggattgattattgaatgttttgtaagaagcatactcatccttgctgcacacatgctttcttgtttctcagGTTTTGGTGGATCTCTTTCGACATGATTTGCGACTGTGGAAAGCATATAACATCACCTTACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211446884|gb|FL341663.1|FL341663
EST:     AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAG                         GTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
genomic: AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAGgtaaaacttg ... gcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
EST: gi|211446492|gb|FK979151.1|FK979151
EST:     AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAG                         GTYTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
genomic: AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAGgtaaaacttg ... gcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
EST: gi|32867742|gb|CF007424.1|CF007424
EST:     AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAG                         GTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
genomic: AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAGgtaaaacttg ... gcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
EST: gi|211253319|gb|FL352230.1|FL352230
EST:     AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAG                         GTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
genomic: AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAGgtaaaacttg ... gcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
EST: gi|32868501|gb|CF008183.1|CF008183
EST:     AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAG                         GTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC
genomic: AGTTTAAGGAATGGATCGTGGTGCTAGCTACTTTATTGCGGCGTGCAGAGgtaaaacttg ... gcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttgtcaaaaaagaactcatccttgctgctgtgatttattttgcttccttagGTTTTGGTGGATCTCTTTAGGCATGATTTGCGATTGTGGAAAGCATATAGCATTACTCTACAG
                                     tttattttgcttcctt  CT-rich tract
                                  tgatttatttt  TA-rich tract