Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacatcctctggcctgcatttgatgcataggatccatatgtgccttatgaaatgtcctgcttctctttcttttctggcaccttaattgtttctctgaatattctttttctatactgtagGGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAG

Basic information

species Zea mays
transcript GRMZM2G048067_T02
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os11g01872.1 (Oryza sativa), 3'ss of exon 20
--------------------------gttacatcctctggcctgcatttgatgcataggatccatatgtgccttatgaaatgt-cctgcttctctttcttttctggcaccttaattgtttctctgaa---tattctttttctatactgtagGGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAG
                             ||||  ||        |  |   || |    | |||      |  |  | |      ||| |   | | |   |   ||| || ||  |   ||  ||    | | |||  |  | ||||||| | || ||||| || || ||||| || |||||| ||||||||||||| || ||||| ||||| |||||||||||||| ||||||
gtaagtagatgtttgatgagatatcaaccacatgttccattgcagagatttcgcttcatgtgcatcctccgcccacaacacacatatgcatgcttatttgcgcgcacacatttatgctacttcctaagttcaatttttcccattgctgtagGCTAGTATATACAGCAAGACCACATGCCCCAAGATCAGAAAAGGTTGTTGGTATAGGATTTCAGCCTGGGTTTGATCCCTACAAG

upper sequence: GRMZM2G048067_T03 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os12g01922.1 (Oryza sativa), 3'ss of exon 21
--------------------------gttacatcctctggcctgcatttgatgcataggatccatatgtgccttatgaaatgt-cctgcttctctttcttttctggcaccttaattgtttctctgaa---tattctttttctatactgtagGGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAG
                             ||||  ||        |  |   || |    | |||      |  |  | |      ||| |   | |     |   ||| || ||  |   ||  ||    | | |||  |  | ||||||| | || ||||| || || ||||| || |||||| ||||||||||||| || ||||| ||||| |||||||||||||| ||||||
gtaagtagatgtttgatgagatatcaaccacatgttccattgcagagatttcgcttcatgtgcatcctctgcccacaacacacatatgcatgcttattcgcgcgcacacatttatgctacttcctaagttcaatttttcccattgctgtagGCTAGTATATACAGCAAGACCACATGCCCCAAGATCAGAAAAGGTTGTTGGTATAGGATTTCAGCCTGGGTTTGATCCCTACAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttttctggcaccttaattgtttctctgaatattctttttctatactgtagGGTTGTCTATACGGCCAGGCCACACGCACCAAGAACAGAAAAGGTTGTAGGCATAGGGTTTCAACCTGGGTTTGATCCTTACAAG
               ccttaat  putative branch site (score: 4)
                                    ttctttttctatact  putative PPT
                                aatattctttttctat  TA-rich tract