1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...cctaggcgccgctcccccgcctcgtggcaacgcacgagcacattcctagtagactagtacacattaaggtactacaatctttacaacagtccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG
species | Zea mays |
transcript | GRMZM2G047310_T02 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: AAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTEST: gi|101399213|gb|EB821480.1|EB821480
genomic: AAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTT-GGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCT
EST: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCAEST: gi|13557985|gb|BG549341.1|BG549341
genomic: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
EST: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCAEST: gi|211011729|gb|FL062982.1|FL062982
genomic: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
EST: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTGGTAATGGTGGGCTAACTCAGAGGGCATCTGCAEST: gi|5816386|gb|AI987302.1|AI987302
genomic: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
EST: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTGGTAATGGNGGGCCAACTCAGAGGGCATCTGCAEST: gi|93281335|gb|EB673599.1|EB673599
genomic: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
EST: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCAEST: gi|149103859|gb|EE289270.2|EE289270
genomic: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
EST: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAG GGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
genomic: GAAATTCCTTCCAGAAGAAACTCTCGCTGCTTTTTGGATTGCGTTCTGAGgtaaacctga ... ccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCA
ctagtagactagtacacattaaggtactacaatctttacaacagtccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG
tccttttgt CT-rich tract
aatcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctaggcgccgctcccccgcctcgtggcaacgcacgagcacattcctagtagactagtacacattaaggtactacaatctttacaacagtccttttgtagGGTGCACCTAGGAGCTCTGGTAATGGTGGGCCAACTCAGAGGGCATCTGCATTAGCAGCTCTATCATCCGCATTCAATCCATCATCTCAACAAAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - -gccgctc
- - - - - - - - - - - - - - - - cacgagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacaaca