1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtatgatattactagcactaagaatttgttacggtacttagttttacaatcaaatattggttgtcgttaacctcttgactgattattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGGAGAAGAAG
species | Zea mays |
transcript | GRMZM2G042074_T02 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|7238135|gb|AW573357.1|AW573357
genomic: ACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|7227796|gb|AW566437.1|AW566437
genomic: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|6536570|gb|AW224883.1|AW224883
genomic: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|20506891|gb|BQ279387.1|BQ279387
genomic: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|33096896|gb|CF056856.1|CF056856
genomic: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: GGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|26456741|gb|CA828324.1|CA828324
genomic: GGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGEST: gi|22819410|gb|BU499500.1|BU499500
genomic: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
EST: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAG AATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
genomic: TAGAAGCTATAGCTAACTTGACAGAAGGGTACTCGGGTAGTGATCTCAAGgtatgatatt ... ttattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAG
ttagttttacaatcaaatattggttgtcgttaacctcttgactgattattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGGAGAAGAAG
gactgat putative branch site (score: 283)
ttattttc CT-rich tract
tttacaatcaaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatattactagcactaagaatttgttacggtacttagttttacaatcaaatattggttgtcgttaacctcttgactgattattttcagAATCTTTGTGTTACTGCTGCTCATCGTCCTATTAGGGAGATTCTTGAAAAGGAGAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG