1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...gtgagctgattgctgatattgaactggtgcatcatgtgcgcatttatacctgcctgctgtttcaacactaaacgtgaaatgtctaccttcaatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTCAGCTATATTACACTTGTTTCTACGCTGCTTCTAATGTATGTATGTAGC
species | Zea mays |
transcript | GRMZM2G036206_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGCTGTTCAAAAATATG GCTCTTGAGAGAAEST: gi|211089151|gb|FL459717.1|FL459717
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAA
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTEST: gi|113602419|gb|DW767581.1|DW767581
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTT
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCEST: gi|5762226|gb|AI967274.1|AI967274
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTC
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTEST: gi|71772016|gb|DR969953.1|DR969953
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTT
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTEST: gi|5871151|gb|AW017592.1|AW017592
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTT
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTEST: gi|6020497|gb|AW065425.1|AW065425
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTT
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTEST: gi|7844205|gb|AW787427.1|AW787427
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTT
EST: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATG GCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTA
genomic: ATTGCGGGATACCATTGTTCTAGTACTAAGGTTGTTCAAAAATATGgtacgaatca ... aatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTA
atacctgcctgctgtttcaacactaaacgtgaaatgtctaccttcaatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTCAGCTATATTACACTTGTTTCTACGCTGCTTCTAATGTATGTATGTAGC
cactaaa putative branch site (score: 14)
ttcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctgattgctgatattgaactggtgcatcatgtgcgcatttatacctgcctgctgtttcaacactaaacgtgaaatgtctaccttcaatttcgcagGCTCTTGAGAGAAGAGGAAGAAGAAAGAAGGGTCTTTTCTTCAAGTAGTTTCAGCTATATTACACTTGTTTCTACGCTGCTTCTAATGTATGTATGTAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
-tgagctg
- - - - - tgctgat
- - - - - - - - - - - -ctggtgc
- - - - - - - - - - - - - - - - catgtgc
- - - - - - - - - - - - - - - - - - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - cctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaatg