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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctctgatattggagcacatccgttgttcgaaaactagccggagaagtttctcaaaatcccactagcggaggtgctgacagcatttgctatttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC

Basic information

species Zea mays
transcript GRMZM2G032628_T01
intron # 20
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032628_T01 (Zea mays), 3'ss of exon 20
lower sequence: LOC_Os02g32660.1 (Oryza sativa), 3'ss of exon 20
--------tctctgatattggagcacatccgttgttc--gaaaactagccggagaagtttctcaaaatcccactagcggaggtgctgacagcatttgctatttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC
        |      | ||| ||| | | | |  |||    | || | | |||   |||  |      |  |   ||  |     | |      |||||  || || ||||||||||||||||| || |||||||| |||||||||||| |||||||||||||| | || ||||||||||| |||
aagtcctctagtcagttttgcagcgcgttcatgcttcttacagacgaactggatgtgttggttg----ctgaactgcaaaataatttatg----ttgct--ttctatcagGTGGTCTTGGACTCAGATGCTGGACTCTTTGGTGGATTTGGCAGGATCCATCACACTGCAGAGCACTTCACTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37381825|gb|CF627810.1|CF627810
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|32802913|gb|CD955149.1|CD955149
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTACTTGGTGGATTTAGCGGGATC
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATC
EST: gi|31354152|gb|CD438509.1|CD438509
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31352159|gb|CD436516.1|CD436516
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67017922|gb|CO446671.1|CO446671
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGNGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24767475|gb|CA402617.1|CA402617
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24765722|gb|CA400881.1|CA400881
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24764942|gb|CA400103.1|CA400103
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31359215|gb|CD443572.1|CD443572
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24764657|gb|CA399821.1|CA399821
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67015582|gb|CO444331.1|CO444331
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67032289|gb|CO461038.1|CO461038
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24768732|gb|CA403861.1|CA403861
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|32838528|gb|CD978206.1|CD978206
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67042631|gb|CO468886.1|CO468886
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGNGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24763965|gb|CA399135.1|CA399135
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|166530539|gb|EG161960.1|EG161960
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGG
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGG
EST: gi|4804600|gb|AI665623.2|AI665623
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31357545|gb|CD441902.1|CD441902
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|32848466|gb|CD988147.1|CD988147
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67022063|gb|CO450812.1|CO450812
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31359366|gb|CD443723.1|CD443723
EST:     ACAGCTATTTTGACTACCG-GGGGGTTGTCGAAAGCCTGGGGTGTATAAG                         GGGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31348898|gb|CD433255.1|CD433255
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|5455664|gb|AI833354.1|AI833354
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|78027354|gb|DV495741.1|DV495741
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67026391|gb|CO455140.1|CO455140
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24764776|gb|CA399938.1|CA399938
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24763853|gb|CA399024.1|CA399024
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|5152759|gb|AI759057.1|AI759057
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31356764|gb|CD441121.1|CD441121
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31351548|gb|CD435905.1|CD435905
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|32934900|gb|CF039712.1|CF039712
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67018661|gb|CO447410.1|CO447410
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAA                         GTGGTCTTGGACTCCGACGCTGGACTATTTAGTGGAATTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24769475|gb|CA404604.1|CA404604
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|5058686|gb|AI737162.1|AI737162
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31350231|gb|CD434588.1|CD434588
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67017558|gb|CO446307.1|CO446307
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24765056|gb|CA400217.1|CA400217
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGCCGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|5058574|gb|AI737050.1|AI737050
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|32933088|gb|CF037900.1|CF037900
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31350932|gb|CD435289.1|CD435289
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67043028|gb|CO469283.1|CO469283
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|67011365|gb|CO440114.1|CO440114
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTNCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|5343127|gb|AI795537.1|AI795537
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGNGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24767830|gb|CA402966.1|CA402966
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|24767251|gb|CA402395.1|CA402395
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31349259|gb|CD433616.1|CD433616
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31352581|gb|CD436938.1|CD436938
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|6012484|gb|AW061921.1|AW061921
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTCAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|83278477|gb|DV942485.1|DV942485
EST:     ACAGTTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTCAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31362258|gb|CD446615.1|CD446615
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|6564265|gb|AW231887.1|AW231887
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTCAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|6526754|gb|AW216035.1|AW216035
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTCAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|213168446|gb|FM189757.1|FM189757
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCAAAAGCCTGGGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
EST: gi|31355884|gb|CD440241.1|CD440241
EST:     ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGNGGTGTATAAG                         GTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT
genomic: ACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 48 (downstream exon)
Score: 47

TGTGTTCGAAAAGGGAGATTTGGTATTTGTGTTCAACTTCCACTGCAACAACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC


Block sizes: 29 (upstream exon), 45 (downstream exon)
Score: 5

TGTGTTCGAAAAGGGAGATTTGGTATTTGTGTTCAACTTCCACTGCAACAACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 9

TGTGTTCGAAAAGGGAGATTTGGTATTTGTGTTCAACTTCCACTGCAACAACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 279

TGTGTTCGAAAAGGGAGATTTGGTATTTGTGTTCAACTTCCACTGCAACAACAGCTATTTTGACTACCGTATTGGTTGTCGAAAGCCTGGGGTGTATAAGgtatgcatct ... tttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttctcaaaatcccactagcggaggtgctgacagcatttgctatttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC
                           tgctgac  putative branch site (score: 279)
                                           tatttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctctgatattggagcacatccgttgttcgaaaactagccggagaagtttctcaaaatcccactagcggaggtgctgacagcatttgctatttgtaccagGTGGTCTTGGACTCCGACGCTGGACTATTTGGTGGATTTAGCAGGATCCATCACGCAGCCGAGCACTTCACCGCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - -cacatcc
- - - - - - - - - - - - - - -gaaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc