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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagtaataatagttcacacttgttgaaaaagaatttattttttttctacgacggttattaacttatctctgttctttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAGTACCCTTTTCTTTTATTCCATGCTACAAAGTTTGGTGTCGTAACAAGCA

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 20
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60344250|gb|DN211223.1|DN211223
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|213188133|gb|FM182573.1|FM182573
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|32833965|gb|CD973643.1|CD973643
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|32845938|gb|CD985619.1|CD985619
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|67017479|gb|CO446228.1|CO446228
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|6564250|gb|AW231872.1|AW231872
EST:     TGGTGNCAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACT-CCCCTTTTAA
EST: gi|6022040|gb|AW066983.1|AW066983
EST:     TGGTGACAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|211181079|gb|FL441227.1|FL441227
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|60355192|gb|DN222165.1|DN222165
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|32793645|gb|CD945881.1|CD945881
EST:     GATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTT
genomic: GATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTT
EST: gi|101391685|gb|EB817779.1|EB817779
EST:     TGGTGACAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|6564119|gb|AW231741.1|AW231741
EST:     TGGTGCCAAGGGAGTGGTTTACACCCCCAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACT-CCCCTTTTAA
EST: gi|32930909|gb|CF035721.1|CF035721
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA
EST: gi|149066719|gb|EE286860.2|EE286860
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|211181077|gb|FL441225.1|FL441225
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|61118748|gb|DN559709.1|DN559709
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCCCTTTTAAG
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAG
EST: gi|32930810|gb|CF035622.1|CF035622
EST:     TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAG                         GCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTTCTCCTTTTAA
genomic: TGGTGACAAGGGAGTGGTTTACACCCACAAGGATCTTCCTTTGCAATGAGgcaagtaata ... tttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCC-CCTTTTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaatttattttttttctacgacggttattaacttatctctgttctttgttgcagGCAAATAACCTCCGTTGTGGTCGTAACGAATGGCTGGACTCCCCTTTTAAGTACCCTTTTCTTTTATTCCATGCTACAAAGTTTGGTGTCGTAACAAGCA
                          tattaac  putative branch site (score: 1)
                                cttatctctgttcttt  CT-rich tract
     ttattttttttcta  TA-rich tract