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gtaagcattctttatatgtacttcccatgataaacttttgtcaaatggtattggtatttcacaaagggcttactgtactttcatcttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATGCCTTGTGAAGATGGTTTGTTGGGATTGCGATTCCCTTTATGCGTCCTGT
species | Zea mays |
transcript | GRMZM2G023858_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAA GGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATTATGEST: gi|37379500|gb|CF626494.1|CF626494
genomic: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAAgtaagcattc ... ttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATG
EST: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAA GGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATGEST: gi|12973200|gb|BG268362.1|BG268362
genomic: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAAgtaagcattc ... ttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATG
EST: GTACATGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAA GGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATEST: gi|83279234|gb|DV943242.1|DV943242
genomic: GTAC-TGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAAgtaagcattc ... ttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTAT
EST: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAA GGCACCAACTTTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATTATGEST: gi|93016565|gb|EB642085.1|EB642085
genomic: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAAgtaagcattc ... ttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATG
EST: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAA GGCACCAACTCTAATAGATTCCAC-ATCTGGAAAGCGAGGGCAGTTATCAT
genomic: GGTACTGGTCTGAATTTAATCAAATGAGCATCGAGCTGTTAGAAAACCAAgtaagcattc ... ttattggcagGGCACCAACTCTAATAGATTC-ACCATCTGGAAAGCGAGGGCAGTTATCAT
tcaaatggtattggtatttcacaaagggcttactgtactttcatcttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATGCCTTGTGAAGATGGTTTGTTGGGATTGCGATTCCCTTTATGCGTCCTGT
ggcttac putative branch site (score: 63)
ctttcatctt putative PPT
atcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattctttatatgtacttcccatgataaacttttgtcaaatggtattggtatttcacaaagggcttactgtactttcatcttattggcagGGCACCAACTCTAATAGATTCACCATCTGGAAAGCGAGGGCAGTTATCATGCCTTGTGAAGATGGTTTGTTGGGATTGCGATTCCCTTTATGCGTCCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG