1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtaatgacaaagtacattttatccatttgttgtatttgaacgatagaaaggagaattcttggttttaaaaaattgagctaatggacaaacaacattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAAGAAGCCTGCCGCCGCCGCTGTGAAGCCGAAGGCTCCTGCCGCCAGGAA
species | Zea mays |
transcript | GRMZM2G021270_T01 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|31350260|gb|CD434617.1|CD434617
genomic: CTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|19350824|gb|BM895356.1|BM895356
genomic: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|22491413|gb|BU051336.1|BU051336
genomic: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|211274759|gb|FL135671.1|FL135671
genomic: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CGTCTTGCTGCCTTTAACT-TTAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|87153215|gb|DY398004.1|DY398004
genomic: CGTCTTGCTGCCTTTAA-TATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|93284596|gb|EB676860.1|EB676860
genomic: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAEST: gi|9953737|gb|BE640320.1|BE640320
genomic: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
EST: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTG CTATGGAAACTGAACCAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
genomic: CCGTCTTGCTGCCTTTAATATAAATGACTCATCTCCTCCTGATCACTCTGgtaatgacaa ... cattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAA
aaggagaattcttggttttaaaaaattgagctaatggacaaacaacattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAAGAAGCCTGCCGCCGCCGCTGTGAAGCCGAAGGCTCCTGCCGCCAGGAA
agctaat putative branch site (score: 16)
aattcttggttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgacaaagtacattttatccatttgttgtatttgaacgatagaaaggagaattcttggttttaaaaaattgagctaatggacaaacaacattttgcagCTATGGAAACTGAAACAACAGAACAGCCGGCTCAGAAGAAAGGGAGAGGAAAGAAGCCTGCCGCCGCCGCTGTGAAGCCGAAGGCTCCTGCCGCCAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC