1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaaaagtctaaaacatttagtctgctctgctatatgttcatgtgattcaatttctttgtatttgtgtttgtttggttatggaagtattcattttttttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACACTTCAACGCACAGATGCAATCAAACATCTGATACCGATTCTGGAGCTTC
species | Zea mays |
transcript | GRMZM2G017654_T02 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACAEST: gi|67013249|gb|CO441998.1|CO441998
genomic: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAGgtaaaagtct ... ttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACA
EST: C-AGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACAEST: gi|67014005|gb|CO442754.1|CO442754
genomic: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAGgtaaaagtct ... ttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACA
EST: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACAEST: gi|91878211|gb|EB408168.1|EB408168
genomic: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAGgtaaaagtct ... ttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACA
EST: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAG ATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACA
genomic: CAAGGGTTTTCCAAATGTTTAACAAGATAGAGCCTCCTATTCTTCTTAAGgtaaaagtct ... ttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACA
ttctttgtatttgtgtttgtttggttatggaagtattcattttttttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACACTTCAACGCACAGATGCAATCAAACATCTGATACCGATTCTGGAGCTTC
tattcatttttttttt CT-rich tract
aagtattcattttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagtctaaaacatttagtctgctctgctatatgttcatgtgattcaatttctttgtatttgtgtttgtttggttatggaagtattcattttttttttgtgcagATTCTTAGGTGCATTAATCATTTGTCGGGTGATCCTAATTGTCTTGAGACACTTCAACGCACAGATGCAATCAAACATCTGATACCGATTCTGGAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT