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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgcacatctcatcttgtatctcaaaatttctcaatatcatggtacttatgttcgtattttttcttgcaatttgtttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG

Basic information

species Zea mays
transcript GRMZM5G896731_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89248113|gb|DY619899.1|DY619899
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|78109136|gb|DV527553.1|DV527553
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|88756830|gb|DY540971.1|DY540971
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|71438321|gb|DR819371.1|DR819371
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|76293027|gb|DV032595.1|DV032595
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGAGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|89250808|gb|DY622594.1|DY622594
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|91053266|gb|EB163684.1|EB163684
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|211387371|gb|FL162620.1|FL162620
EST:     GTGGGTCATGGNCA-CCCTGGTGAGAATGTATCA-TC-ACCAGGCACAAC                         GTGGGTTTTGATA-GATAGATGCATTTGCGCCATCCCAGGGTATACCCCTG
genomic: GTGGGTCTTGG-CAACCCTGGTGAGAA-GTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|91050003|gb|EB160421.1|EB160421
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
EST: gi|78085320|gb|DV513713.1|DV513713
EST:     TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAAC                         GTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG
genomic: TTGTGGGTCTTGGCAACCCTGGTGAGAAGTATCAATCCACCAGGCACAACgtaagttgca ... ttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcaatatcatggtacttatgttcgtattttttcttgcaatttgtttgctcacagGTGGGTTTTGATATGATAGATGCATTTGCGCAATCCCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG
                                        tttgttt  CT-rich tract
                         tattttttctt  TA-rich tract