1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaaaggttgtaattagttaatatgaactaggagttaatgtgcattgtaatgcattctaactgcaatgggataactcataaatgtgatttcatgttgcagGAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGTACATGATGCCTTAACAA
species | Zea mays |
transcript | GRMZM5G895188_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGTCCTCACCTAAAGTAAAGTTTCAAAAAGGATGCACATATAACAG GAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGTEST: gi|211405990|gb|FL414505.1|FL414505
genomic: GCTTGGTCCTCACCTAAAGTAAAGTTTCAAAAAGGATGCACATATAACAGgttagtgtcc ... catgttgcagGAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGT
EST: TTTCAAAAAGGATGCACATATAACAG GAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGT
genomic: TTTCAAAAAGGATGCACATATAACAGgttagtgtcc ... catgttgcagGAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGT
tgtaatgcattctaactgcaatgggataactcataaatgtgatttcatgttgcagGAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGTACATGATGCCTTAACAA
tcataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaaggttgtaattagttaatatgaactaggagttaatgtgcattgtaatgcattctaactgcaatgggataactcataaatgtgatttcatgttgcagGAGGTACACCCAATTCTACGGAACTTCTGAGAAATCGGCTGTTAATTTGGTACATGATGCCTTAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatt