1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atatttgaagtatattccttagtatctcgccatggtcatgctatatacatgctgattccaccagttttatgttgttctgacaaatttgttggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGAACGACATTTGGGCGACCTGGGAAATATAGTAGCCAATGAAGATG
species | Zea mays |
transcript | GRMZM5G891739_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACEST: gi|4804563|gb|AI665586.2|AI665586
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACC-Ggttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGAC
EST: ACTACCAATGGCTGCAACTCAACCG GGCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGATGEST: gi|67039156|gb|CO465411.1|CO465411
genomic: ACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GGCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGATGEST: gi|211127614|gb|FL312983.1|FL312983
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GGCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGATGEST: gi|211400090|gb|FL367035.1|FL367035
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATACCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGEST: gi|211279556|gb|FL330408.1|FL330408
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGEST: gi|211437458|gb|FL316488.1|FL316488
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGEST: gi|78027318|gb|DV495705.1|DV495705
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GGCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGATGEST: gi|211462831|gb|FL343053.1|FL343053
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATWCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GGCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGATGEST: gi|47962526|gb|CN845235.1|CN845235
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGEST: gi|211383533|gb|FL339775.1|FL339775
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGEST: gi|45568100|gb|CK985902.1|CK985902
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
EST: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCG GTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
genomic: ATTCCACATCCACGTCTTCGGCGACACTACCAATGGCTGCAACTCAACCGgttcgccgcc ... ggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACG
tacatgctgattccaccagttttatgttgttctgacaaatttgttggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGAACGACATTTGGGCGACCTGGGAAATATAGTAGCCAATGAAGATG
ttctgac putative branch site (score: 93)
ttttatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttgaagtatattccttagtatctcgccatggtcatgctatatacatgctgattccaccagttttatgttgttctgacaaatttgttggcttcatagGTCCCCATTTTAACCCTCATAATAAACCCCATGGAGCTCCATTTGACGACGAACGACATTTGGGCGACCTGGGAAATATAGTAGCCAATGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - -cgccatg
- - - - - - - - - - - - - - - - - gtcatgc
- - - - - - - - - - - - - - - - - - - - - - -tacatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt