1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcattttatacaaatgttctctgttactgaagtacagtgcttacaatcgatcattgtaccatattgactaacttgattttatggtgtcccgtgaatgcagAGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTTCACGTATCTGGGTTTTATTGGTGTTACAAGAACGGGGACCTTATAAGAC
species | Zea mays |
transcript | GRMZM5G890843_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCAAGTCCAATGATATCCTGCGTAAGCAGACTGCTCTGAAG AGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTTEST: gi|32924225|gb|CF029037.1|CF029037
genomic: GTTCAAGTCCAATGATATCCTGCGTAAGCAGACTGCTCTGAAGgttggtgatt ... gtgaatgcagAGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTT
EST: CGGTGATGTTCAAGTCCAATGATATCCTGCGTAAGCAGACTGCTCTGAAG AGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTTEST: gi|211023733|gb|FL449222.1|FL449222
genomic: CGGTGATGTTCAAGTCCAATGATATCCTGCGTAAGCAGACTGCTCTGAAGgttggtgatt ... gtgaatgcagAGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTT
EST: CGGTGATGTTCAAGTCCAATGATATTCTGCGTAAGCAGACTGCTCTGAAG AGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTT
genomic: CGGTGATGTTCAAGTCCAATGATATCCTGCGTAAGCAGACTGCTCTGAAGgttggtgatt ... gtgaatgcagAGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTT
atcgatcattgtaccatattgactaacttgattttatggtgtcccgtgaatgcagAGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTTCACGTATCTGGGTTTTATTGGTGTTACAAGAACGGGGACCTTATAAGAC
taacttgattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattttatacaaatgttctctgttactgaagtacagtgcttacaatcgatcattgtaccatattgactaacttgattttatggtgtcccgtgaatgcagAGGGAGAGAAAAATTCCAGTTCTTGTCGGGATTACAATATTATTTGTTGTTCACGTATCTGGGTTTTATTGGTGTTACAAGAACGGGGACCTTATAAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - -atacaaa
- - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - -tgcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtacca