1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcaaatcaagattcccatttgttttctgaaagctctgttgtttgcattacactgattagtgtttagttctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTCTTCCGGCAGTGTCAACATCCTTGGCTCTAGCTGCTGGCATTGGATTACT
species | Zea mays |
transcript | GRMZM5G890665_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGGGAAA GAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCTAAAGA-GGTTEST: gi|211025184|gb|FL300500.1|FL300500
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACC-AAAGAAGGTT
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGGGAAA GAGATGAATTTTTGACGCCACTAGAGAANGGCAGGGCAACCAAAGAAGGTTEST: gi|148939832|gb|EC884537.2|EC884537
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctagGAGATGAATTTTTGACGCCACTAGAGAA-GGCAAGGCAACCAAAGAAGGTT
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA GAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTCEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTC
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|149072460|gb|EE160737.2|EE160737
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA TEST: gi|211025185|gb|FL300501.1|FL300501
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctag-
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAA GAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTCEST: gi|211025182|gb|FL300498.1|FL300498
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTC
EST: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGGGAAA GAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTC
genomic: TGTTGCTGAGCAGCAGGCAAAGGATGGCAATTCGAACACTGGAGGTGAAAgtaagcaaat ... tctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTC
tttctgaaagctctgttgtttgcattacactgattagtgtttagttctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTCTTCCGGCAGTGTCAACATCCTTGGCTCTAGCTGCTGGCATTGGATTACT
ttctcac putative branch site (score: 2)
ttctcacct CT-rich tract
tttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaaatcaagattcccatttgttttctgaaagctctgttgtttgcattacactgattagtgtttagttctcacctagGAGATGAATTTTTGACGCCACTAGAGAAGGCAAGGCAACCAAAGAAGGTTCTTCCGGCAGTGTCAACATCCTTGGCTCTAGCTGCTGGCATTGGATTACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT