1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...ctgtatgcctacattctaaatcagcatgtgtacctgttcatgtcatacatcttagaacctggcaacctgttttgacctgtattgctattcttgttgatagGCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAAATTTTGACGCCTTACCTGGATGGAATTGTGAACAAATTACTTGTTCTTC
species | Zea mays |
transcript | GRMZM5G887631_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCTGCATTGGCCAATGCTATGGATGATTTCCAGAATCCACGAGTTCAG GCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAAEST: gi|5777322|gb|AI974941.1|AI974941
genomic: TGCCTGCATTGGCCAATGCTATGGATGATTTCCAGAATCCACGAGTTCAGgtcagttgtc ... ttgttgatagGCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAA
EST: TGCCTGCATTGGCCAATGCTATGGATGATTTCCAGAATCCACGAGTTCAG GCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAA
genomic: TGCCTGCATTGGCCAATGCTATGGATGATTTCCAGAATCCACGAGTTCAGgtcagttgtc ... ttgttgatagGCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAA
tacatcttagaacctggcaacctgttttgacctgtattgctattcttgttgatagGCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAAATTTTGACGCCTTACCTGGATGGAATTGTGAACAAATTACTTGTTCTTC
ttttgac putative branch site (score: 116)
ctattctt putative PPT
tattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtatgcctacattctaaatcagcatgtgtacctgttcatgtcatacatcttagaacctggcaacctgttttgacctgtattgctattcttgttgatagGCACATGCTGCTTCAGCGATTTTGAATTTTAGTGAGAATTGTACACCGGAAATTTTGACGCCTTACCTGGATGGAATTGTGAACAAATTACTTGTTCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-tgtatgc
- - - - - - - - - - -cagcatg
- - - - - - - - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattg