1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttcgttactttggccatttctttttctgtatcacctccacaacctaatgaatggcccatagtgacattgaggtaattttattatgttcttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG
species | Zea mays |
transcript | GRMZM5G886044_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAG TTCTGGAATGCTAATTTTGAAGGACCTCTGTTTGATCACTGGGAAAGCTTCEST: gi|76011108|gb|DT938278.1|DT938278
genomic: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAGgttttttgtt ... ttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTC
EST: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAG TTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCEST: gi|74244352|gb|DT652266.1|DT652266
genomic: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAGgttttttgtt ... ttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTC
EST: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAG TTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCEST: gi|166617787|gb|EG215328.1|EG215328
genomic: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAGgttttttgtt ... ttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTC
EST: GCTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAG TTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGEST: gi|166622587|gb|EG229984.1|EG229984
genomic: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAGgttttttgtt ... ttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGG
EST: GCTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAG TTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGG
genomic: ACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTTGACGAGgttttttgtt ... ttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGG
ctaatgaatggcccatagtgacattgaggtaattttattatgttcttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG
acctaat putative branch site (score: 2)
tgttctttt putative PPT
taattttattatgttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttcgttactttggccatttctttttctgtatcacctccacaacctaatgaatggcccatagtgacattgaggtaattttattatgttcttttatgcagTTCTGGAATGCTAAATTTGAAGGACCTCTGTTTGATCACTGGGAAGGCTTCTTGGCTAGCGTACCTG
- - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - -cacctcc
- - - - - - - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacatt