1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgtgttccccctttccctgctgctgcctgcttcctattgcctttggttttttattcttttgttgatggacgtatgtgtgttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCGACCCACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTT
species | Zea mays |
transcript | GRMZM5G886044_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCG CTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|71438985|gb|DR820035.1|DR820035
genomic: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCGgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCG CTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|71427292|gb|DR808342.1|DR808342
genomic: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCGgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCG CTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|71438108|gb|DR819158.1|DR819158
genomic: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCGgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCG CTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCEST: gi|211224659|gb|FL333917.1|FL333917
genomic: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCGgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCC
EST: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCG CTGTTGAGTTCCACATGCCG
genomic: GCTCGAGGTGATGTCGCCCCCGGCGGAGCACCCAGACGAAGGATCCGTCGgttcgtgttc ... ttttgcgtagCTGTTGAGTTCCACATGCCG
tattgcctttggttttttattcttttgttgatggacgtatgtgtgttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCGACCCACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTT
tgttgat putative branch site (score: 15)
ttttttattcttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtgttccccctttccctgctgctgcctgcttcctattgcctttggttttttattcttttgttgatggacgtatgtgtgttttgcgtagCTGTTGAGTTCCACATGCCGCCTATCTGCTCCCCGCTGGTTAGGCCAGGCCGACCCACTGACGTTGCACCCGTCATCTCCAAGGCCCTTGAAGACGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA