Sequence
atgc intronic sequence ATGC exonic sequencegtagtatctcaaccataaacatgaatgtttttctacaggcatttagtgcaaagtatctcaaatataatgttatatattgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTCGAGATGCAGAGAAAAGAGCTTTATAGGATATGACTGGCATCACTGATGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G885923_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g10220.1 (Oryza sativa), 3'ss of exon 2
gtagtatctcaaccataaacatgaatgtttttctacaggcatttagtgcaaagtatctcaaatataatgttatatattgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTCGAGATGCAGAGAAAAGAGCTTTATAGGATATGACTGGCATCACTGATGATG
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gtaggatcttgtttccaaa---------ttttttccatggattaagtgccatttgtctcaattgagctgttatgtgatgtcagGAAGCCAAGGAGAAATTTCAGCAGCTTCAGAAGGTGATATCTATTCTTGGGGATGAGGAGAAAAGGGCATTATATGATGAGACTGGAATTGCTGATGATG
upper sequence: GRMZM5G885923_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G12170.1 (Arabidopsis thaliana), 3'ss of exon 2
----------------gtagtatctcaaccata---aacatgaatgtttttctacaggcatttagtgcaaa-gtatctcaaatataatgttatatattgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTCGAGATGCAGAGAAAAGAGCTTTATAGGATATGACTGGCATCACTGATGATG
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gtttaactgaggggttttggtttctttacttttcttagtttttaggggtctattcaattttacattgtaaccggaattcttgtttt-tcttatccaatac-agGATGCTAAAGAGAAATTTCAGCAGTTGCAAAAGGTTATTTCGATTCTCGGTGATGAAGAGAAAAGAGCAGTCTATGATCAAACTGGCTCAGTTGATGATG
upper sequence: GRMZM5G885923_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G06910.1 (Arabidopsis thaliana), 3'ss of exon 2
gtagtat-ctcaaccataaacatgaatgtttttctacaggcatttagtgcaaagtatctcaaatataatgttatatattgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTCGAGATGCAGAGAAAAGAGCTTTATAGGATATGACTGGCATCACTGATGATG
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gttaaatacacactcttttacttgagatattttttggattcatttacatgaagattctactattgttttgttaca--------gGAAGCTAAAGACAAGTTCCAGCAGCTGCAAAAAGTGATATCAATTCTTGGTGATGAAGAGAAAAGGGCAGTCTATGATCAAACTGGCTCAATTGATGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttctacaggcatttagtgcaaagtatctcaaatataatgttatatattgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTCGAGATGCAGAGAAAAGAGCTTTATAGGATATGACTGGCATCACTGATGATG
aaagtatctcaaatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtagtatctcaaccataaacatgaatgtttttctacaggcatttagtgcaaagtatctcaaatataatgttatatattgctagGAAGCCAAAGAGAAGTTTCAGCAGCTGCAGAAGGTTATATCCATTCTTCGAGATGCAGAGAAAAGAGCTTTATAGGATATGACTGGCATCACTGATGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT