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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgcacaggctttggagttcttgatgtttcctgtttgtgtaaactcaaacgccgaggattttattgaagcaataaaagGGCCAGATGCTATTATTGTTGGCTATATCAGACAGTTTGTCATCAAGCCTTTGTCTGGATTCCTTTTTGGCACTCTTATGGAGTACTAAGCCACACTGAA

Basic information

species Zea mays
transcript GRMZM5G883871_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211291951|gb|FL254575.1|FL254575
EST:     TCTATATCAGTTGCCAATCATAAGAAACAAATCTTATTATTGCACTCCAG                         GGCCAGATGCTATTTATTGT-GGCTATATCAGACAGTTTGTCATCAAGCCT
genomic: TCTATATCAGTTGCCAATCATAAGAAACAAATCTTATTATTGCACTCCAGgtattatgca ... gcaataaaagGGCCAGATGCTATT-ATTGTTGGCTATATCAGACAGTTTGTCATCAAGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttcctgtttgtgtaaactcaaacgccgaggattttattgaagcaataaaagGGCCAGATGCTATTATTGTTGGCTATATCAGACAGTTTGTCATCAAGCCTTTGTCTGGATTCCTTTTTGGCACTCTTATGGAGTACTAAGCCACACTGAA
 tcttgat  putative branch site (score: 4)
                                  attttattgaa  TA-rich tract