1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacgaagatatactgtgtcctctgattttgcctttttcaggttagtgactgacttgtgggtgttctttgtctgttagGAAAGAATGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCAGAGGTCAGGGAGTGGATGGGTTGAGACATTGTTGAATAGCCATCCTAAT
species | Zea mays |
transcript | GRMZM5G877077_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACACAGAAATCCCTTACTTGCACTACCCAATGCCAAATACTTATGATAG -AA----TGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCAEST: gi|149107402|gb|EE189281.2|EE189281
genomic: GACACAGAAATCCCTTACTTGCACTACCCAATGCCAAATACTTATGATAGgtaacgaaga ... tgtctgttagGAAAGAATGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCA
EST: GACACAGAAATCCCTTACTTGCACTACCCAATGCCAAATACTTATGATAG -AA----TGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCA
genomic: GACACAGAAATCCCTTACTTGCACTACCCAATGCCAAATACTTATGATAGgtaacgaaga ... tgtctgttagGAAAGAATGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCA
tgattttgcctttttcaggttagtgactgacttgtgggtgttctttgtctgttagGAAAGAATGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCAGAGGTCAGGGAGTGGATGGGTTGAGACATTGTTGAATAGCCATCCTAAT
gactgac putative branch site (score: 65)
ttctttgtct putative PPT
tttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgaagatatactgtgtcctctgattttgcctttttcaggttagtgactgacttgtgggtgttctttgtctgttagGAAAGAATGTGCGTGCACGGGGGTTAGGTTCTTTGCTATATTGTCAATGCAGAGGTCAGGGAGTGGATGGGTTGAGACATTGTTGAATAGCCATCCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA