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gtatgaatgagtccttttcatcgcgtatatatatatatatgctgtcgggatcttctgtgctagccgttatgtttagctattcatgggatgtgaaactactttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCATGCGAAAACTCGTGAAGACAGAGCTTCTTGCACCATCGGAGCCCACGAA
species | Zea mays |
transcript | GRMZM5G873519_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|74234749|gb|DT642663.1|DT642663
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCEST: gi|149099738|gb|EE185791.2|EE185791
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGC
EST: GTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGNCA-TCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCEST: gi|211339842|gb|FL096305.1|FL096305
genomic: GTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTG-CAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCC
EST: GTCGGGGATATTC-AGCGGNCTCAGGAATCAAGATCCTTGGCAATCACTT T-GGNGGGCTGGTTTGCTACCCTGACGGTGGCAGGAATATACAGTGT-AGCEST: gi|211337449|gb|FL096295.1|FL096295
genomic: GTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTG-CAATCACTTgtatgaatga ... actttttcagTTGGTGG-CTGGTTTGCTACCCTGACGGTGGCAGGA-TATACAGTGTTAGC
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGGTGGCTGGGTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCEST: gi|211457241|gb|FL096396.1|FL096396
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGG-TGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCC
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGGTTGCTACCCTGAACG-TGGCAGGATATACAGTGTTAGCCEST: gi|211315102|gb|FL381332.1|FL381332
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGA-CGGTGGCAGGATATACAGTGTTAGCC
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|211347036|gb|FL096350.1|FL096350
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTEST: gi|76285948|gb|DV025516.1|DV025516
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGT
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|211351847|gb|FL096379.1|FL096379
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: GTCGGGGATATTC-AGCGGCCTCCAGGA-TCAAGA-CCTTGCAATCACTT TTG-TGGCTTGGTTEST: gi|211349436|gb|FL096363.1|FL096363
genomic: GTCGGGGATATTCCAGCGGCCTC-AGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCT-GGTT
EST: GTCGGGGATATTC-AGCGGCCTCAGGAAATCA-GATCCNTGCAATCACTT TTGGTGGCTGGGTTGCTACCCTGACGGTGGCAGGEST: gi|211342240|gb|FL096324.1|FL096324
genomic: GTCGGGGATATTCCAGCGGCCTCAGGAA-TCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGG
EST: GTCGGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTTGGTGGGCTGGTT-GCTACCCTGEST: gi|211200162|gb|FL429646.1|FL429646
genomic: GTCGGGG-ATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTT-GGTGG-CTGGTTTGCTACCCTG
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|74241098|gb|DT649012.1|DT649012
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|211231751|gb|FL386173.1|FL386173
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|211347026|gb|FL096340.1|FL096340
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: GTCCGGGGATATTC-AGCGGGCTCAGGAATCA-GATCCTTGCAATCACTT TTGGTGGCTGGGTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCAEST: gi|91875592|gb|EB405549.1|EB405549
genomic: GTC-GGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
EST: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTT TTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
genomic: CGTCGGGGATATTCCAGCGGCCTCAGGAATCAAGATCCTTGCAATCACTTgtatgaatga ... actttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCA
ttctgtgctagccgttatgtttagctattcatgggatgtgaaactactttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCATGCGAAAACTCGTGAAGACAGAGCTTCTTGCACCATCGGAGCCCACGAA
ctactttttc CT-rich tract
ttatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatgagtccttttcatcgcgtatatatatatatatgctgtcgggatcttctgtgctagccgttatgtttagctattcatgggatgtgaaactactttttcagTTGGTGGCTGGTTTGCTACCCTGACGGTGGCAGGATATACAGTGTTAGCCATGCGAAAACTCGTGAAGACAGAGCTTCTTGCACCATCGGAGCCCACGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT