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...ttaggtgtgttttttgtacagaatttatcggtcattttgattgtttgagtatatggatgatattatttattttttgacatacctacactgtcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT
species | Zea mays |
transcript | GRMZM5G871572_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG CTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTEST: gi|93012428|gb|EB637948.1|EB637948
genomic: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAGgtcagtttgt ... tcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
EST: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG CTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTEST: gi|28930925|gb|CB334286.1|CB334286
genomic: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAGgtcagtttgt ... tcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
EST: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG CTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTEST: gi|94474067|gb|EB703025.1|EB703025
genomic: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAGgtcagtttgt ... tcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
EST: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG CTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTEST: gi|149055712|gb|EE156420.2|EE156420
genomic: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAGgtcagtttgt ... tcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
EST: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG CTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTEST: gi|71432571|gb|DR813621.1|DR813621
genomic: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAGgtcagtttgt ... tcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
EST: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAG CTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
genomic: TGCGGAGGTGCTGCGGTCGGTGGCGAGGGCTGGCAGCATGAAGGATTTAGgtcagtttgt ... tcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCT
tgagtatatggatgatattatttattttttgacatacctacactgtcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT
ttttgac putative branch site (score: 116)
ctgtcttc putative PPT
atatggatgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaggtgtgttttttgtacagaatttatcggtcattttgattgtttgagtatatggatgatattatttattttttgacatacctacactgtcttcaacagCTGCTATCTTGGACACTGCAAGTAAAGTCCTACCACTTGTAGTTGCCGTCTCTGGGAGAGTTGGTTCAGACACACCACTTATATGCCAACAAAGCGGCAT
- - -tgtgttt
- - - - - - - - - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacactg