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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtatatcttatctctctccgaacgtcggtcggtcggtcgaccatggcgcaccttggattggaaccctaccttaacagttaacatgcacgccccctgcagCTTTCGGCCATGCAATCAGAGCTTGCGCGCATGAACGACGAGAACCAGCGGCTGCGCGGGATGCTCACCCAGGTCACCACCAGCTACCAGGCGCTCCAGA

Basic information

species Zea mays
transcript GRMZM5G871347_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G871347_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g14440.1 (Oryza sativa), 3'ss of exon 1
--------gtacgtatatcttatctctctccgaacgtcggtcggtcggtcgaccatggcgcaccttggattggaaccctaccttaacagt-taacatgcacgccccctgcagCTTTCGGCCATGCAATCAGAGCTTGCGCGCATGAACGACGAGAACCAGCGGCTGCGCGGGATGCTCACCCAGGTCACCACCAGCTACCAGGCGCTCCAGA
        |   | ||     ||||  | |||| |      ||  |||| |  |||||       ||||| |   | | |  || ||  | |  | ||         |||||||  |||| |||||  | ||||| |  ||||||||||| |||||||||||||| || |||||||| |||||||| |||||||||||||||||||| ||||
gctcagcggcgagcatggtggatctgac-ccgagctgaccccgaccggt-ggtcatgga------tggatcg---ctcgatatttacgctctctcgtgtg-atgttttgcagCTCGCGGCGATGCAGGCGGAGCTGGGCCGCATGAACGAGGAGAACCAGCGGCTCCGGGGGATGCTGACCCAGGTGACCACCAGCTACCAGGCGCTGCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgcaccttggattggaaccctaccttaacagttaacatgcacgccccctgcagCTTTCGGCCATGCAATCAGAGCTTGCGCGCATGAACGACGAGAACCAGCGGCTGCGCGGGATGCTCACCCAGGTCACCACCAGCTACCAGGCGCTCCAGA
                               agttaac  putative branch site (score: 3)
                                           cgccccct  putative PPT
                                 ttaacat  TA-rich tract