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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcctttccttttcatgaagtgcttagtcatttacattaataactatagaagaaatcaagtctgacggtatgttattcccaataattgttagGGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTCATCACATTTCCCCCCTGAGTGATAGTTCAGTTAGCGTCGTACGGATGTA

Basic information

species Zea mays
transcript GRMZM5G871262_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89251977|gb|DY623763.1|DY623763
EST:     ATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTACTATGCTATATTT                         GGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTC
genomic: ATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTACTATGCTATATTTgtaagtcctt ... taattgttagGGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTC
EST: gi|78121981|gb|DV540365.1|DV540365
EST:     ATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTATTATGCTATATTT                         GGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTC
genomic: ATGGCTTTGTTGCTCTTGCCATCCTCACACTCTTCTACTATGCTATATTTgtaagtcctt ... taattgttagGGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taataactatagaagaaatcaagtctgacggtatgttattcccaataattgttagGGGTGGAGAAAAAAGAAGCCAACAGGGAGGTTCCAGCTCTCAAAATGATTCATCACATTTCCCCCCTGAGTGATAGTTCAGTTAGCGTCGTACGGATGTA
                                           aataattgtta  TA-rich tract