1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacacttgttttttggtttcatctgtacttctgtaacatcagtgaaaagttattgtttttcagctgttgaccttagtgagaatgagttattgtttttcagCTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATCAAGTTTGTTCTCAATTTGGACACAAACACATTCATACATATTGTCAGCT
species | Zea mays |
transcript | GRMZM5G869993_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGATGACCCTCTCAGTTCCATTATCTGATATATTGGCATTCAAAAAG CTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATCEST: gi|32824734|gb|CD964456.1|CD964456
genomic: TGAAGATGACCCTCTCAGTTCCATTATCTGATATATTGGCATTCAAAAAGgtattcatat ... tgtttttcagCTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATC
EST: TGAAGATGACCCTCTCAGTTCCATTATCTGATATATTGGCATTCAAAAAG CTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATCEST: gi|32827550|gb|CD967228.1|CD967228
genomic: TGAAGATGACCCTCTCAGTTCCATTATCTGATATATTGGCATTCAAAAAGgtattcatat ... tgtttttcagCTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATC
EST: TGAAGATGACCCTCTCAGTTCCATTATCTGATATATTGGCATTCAAAAAG CTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATC
genomic: TGAAGATGACCCTCTCAGTTCCATTATCTGATATATTGGCATTCAAAAAGgtattcatat ... tgtttttcagCTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATC
aaagttattgtttttcagctgttgaccttagtgagaatgagttattgtttttcagCTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATCAAGTTTGTTCTCAATTTGGACACAAACACATTCATACATATTGTCAGCT
tgttgac putative branch site (score: 103)
ttgtttttc putative PPT
ttattgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacttgttttttggtttcatctgtacttctgtaacatcagtgaaaagttattgtttttcagctgttgaccttagtgagaatgagttattgtttttcagCTGTCGAAAGCGTACTTTGGGTATATGGAAGTTCTGTTCAACAACCATATCAAGTTTGTTCTCAATTTGGACACAAACACATTCATACATATTGTCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - tgttttt
- - - - - - - - - - - - - acttctg
- - - - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgttg