1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtttcatcatcagtaacatttgaactctaaatagaacttcagtttaaatgttcatctgatttattgactgttttctatcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACAACTTTGGGGAGTTGTTAGCTCACCCGATT
species | Zea mays |
transcript | GRMZM5G868757_T07 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACEST: gi|148986083|gb|EE029890.2|EE029890
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAEST: gi|148965470|gb|EE016279.2|EE016279
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTA
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGEST: gi|194716906|gb|FK934065.1|FK934065
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAG
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACEST: gi|148930110|gb|EC872431.2|EC872431
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACEST: gi|148948407|gb|EC893924.2|EC893924
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACEST: gi|211082970|gb|FL307146.1|FL307146
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACEST: gi|148982851|gb|EE028701.2|EE028701
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTEST: gi|6020572|gb|AW065605.1|AW065605
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCT
EST: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTA GACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
genomic: TCTATCTGGCCTACACAACTGTGGAGTCTCTATCTGAGTCATTCAAGCTAgtatgtttca ... atcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTAC
tagaacttcagtttaaatgttcatctgatttattgactgttttctatcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACAACTTTGGGGAGTTGTTAGCTCACCCGATT
tattgac putative branch site (score: 2)
ctgttttctatctttt CT-rich tract
tttaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttcatcatcagtaacatttgaactctaaatagaacttcagtttaaatgttcatctgatttattgactgttttctatcttttcagGACTTGGCTTTTGATCTATCTCTAGCAGCCTTGCTGGGTGATAACATTTACAACTTTGGGGAGTTGTTAGCTCACCCGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA