ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...cctcgctgtatttttagggtttggttgttgagatttttctgggcactatcagaatcccttagcaaagaccactgtaacttgttgtgttactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

Basic information

species	Zea mays
transcript	GRMZM5G868273_T02
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM5G868273_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g47340.1 (Oryza sativa), 3'ss of exon 2

---cctcgctgtatttttagggtttggttgttgagatttttctgggcactatcagaatcccttagcaaagaccactgtaacttgttgtgttactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG
     |   | |||   || | ||||  |||   |||  |        || |||       |  | || | |      |   | ||||| | ||  ||| ||| ||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||| |||
tgtattttgtctatcaataag-tttgtgtgtgaggatgctgtcaaatgctttcaatcaagttctgtaagg-ctgtaacagggttttgtgct-ctgctttgcagTGAGATTGCCAAGCACTTGTCACTTCCACCAGTAAAGCTCCATTGTAGCATGCTTGCTGAGGATGCAATTAAAGCTGCCGTGAAAGACTATGAAGCAAAG

upper sequence: GRMZM5G868273_T02 (Zea mays), 3'ss of exon 2
lower sequence: PP1S39_352V6.2 (Physcomitrella patens), 3'ss of exon 4

cctcgctgtatttttagggtttggttgttgagatttttctgggcactatcagaatccc--tta-gcaaagaccactgtaacttgttgtgt------tactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG
          | |  | ||  |  |   ||||   ||| ||||   |  |  | |  |  ||| ||    |  | |  | | ||| ||||      |  | |||| ||| || || || || || |||||  | ||||| || ||| | || |||||||||||||| |||||||| |||||||| ||||| || |||||| | || || 
---------gtgtacaaggcattatgtgtgagtactttatgggtgttgacctattttccattatgcttgaaagattaaagcatgtggtgtgggtattttttttttgcagTGATATTGCCAAACATTTGTCTTTGCCACCTGTGAAGTTGCACTGCAGCATGCTTGCTGAGGATGCTATTAAAGCGGCTGTGAAGGACTACAAGGCTAAA

upper sequence: GRMZM5G868273_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ10697 (Selaginella moellendorffii), 3'ss of exon 2

cctcgctgtatttttagggtttggttgttgagatttttctgggcactatcagaatcccttagcaaagaccactgtaacttgttgtgttactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG
                             |  | ||||||      |   || ||  ||   | | |    ||      | |  | || ||  ||  ||| || ||||| |||||  |||| || || ||||| |||||||| |||||||||||||||||||||||||| ||||| ||  | ||||| ||||| || |||
-----------------------------gtaacttttct---tcttgagaggatttctc--cgagg----ctaagctctctcctctttcttcttcgcagTGACATCGCCAAGCATCTGTCGCTGCCGCCAGTGAAGCTCCACTGCAGCATGCTTGCCGAGGATGCGATCAAAGCCGCGATCAAAGATTACGACGCGAAG

upper sequence: GRMZM5G868273_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ35746 (Selaginella moellendorffii), 3'ss of exon 2

cctcgctgtatttttagggtttggttgttgagatttttctgggcactatcagaatcccttagcaaagaccactgtaacttgttgtgttactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG
                             |  ||||||||      |   || ||   |  |   || | |   | | |  |    || ||  ||  ||| || ||||| |||||  |||| || || ||||| |||||||| |||||||||||||||||||||||||| ||||| ||  | ||||| ||||| ||||||
-----------------------------gtaatttttct---tcttgagaggatttttccg---aggctaagctcattcctc---tttcttcttcgcagTGACATCGCCAAGCATCTGTCGCTACCGCCAGTGAAGCTCCACTGCAGCATGCTTGCCGAGGATGCGATCAAAGCCGCGATCAAAGATTACGACGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|18180166|gb|BM381376.1|BM381376

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149014007|gb|EE043523.2|EE043523

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|60358552|gb|DN225525.1|DN225525

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|78125336|gb|DV543720.1|DV543720

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|4298770|gb|AI438809.1|AI438809

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|116818985|gb|EC862064.1|EC862064

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|15053963|gb|BI359508.1|BI359508

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|4314763|gb|AI444769.2|AI444769

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149047150|gb|EE048156.2|EE048156

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|22473092|gb|BU037572.1|BU037572

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149016048|gb|EE045556.2|EE045556

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|101382325|gb|EB813218.1|EB813218

EST:     AAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: AAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149103445|gb|EE288838.2|EE288838

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|13149884|gb|BG320206.1|BG320206

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|22935992|gb|BU572267.1|BU572267

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|76925043|gb|DV170266.1|DV170266

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|21809552|gb|BQ667870.1|BQ667870

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|50324457|gb|CO519583.1|CO519583

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|12967979|gb|BG264926.1|BG264926

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|31910891|gb|CD651650.1|CD651650

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|29946153|gb|CB816006.1|CB816006

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211388950|gb|FL229480.1|FL229480

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211388957|gb|FL229487.1|FL229487

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|148963506|gb|EE014528.2|EE014528

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|76925045|gb|DV170267.1|DV170267

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|28568991|gb|CB280866.1|CB280866

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211388955|gb|FL229485.1|FL229485

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|74245508|gb|DT653422.1|DT653422

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|31998181|gb|CD661966.1|CD661966

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|14569348|gb|BI097671.1|BI097671

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTT

EST: gi|60345144|gb|DN212117.1|DN212117

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211383684|gb|FL229455.1|FL229455

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCA
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCA

EST: gi|32794322|gb|CD946558.1|CD946558

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149047152|gb|EE048157.2|EE048157

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|16377339|gb|BI991875.1|BI991875

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|21828616|gb|BQ703300.1|BQ703300

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACGC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211388952|gb|FL229482.1|FL229482

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|22819534|gb|BU499624.1|BU499624

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|50324456|gb|CO519582.1|CO519582

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|60344151|gb|DN211124.1|DN211124

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|26557245|gb|CA829480.1|CA829480

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211388945|gb|FL229475.1|FL229475

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|89758516|gb|DY687670.1|DY687670

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|89248929|gb|DY620715.1|DY620715

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCCCCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|32868752|gb|CF008434.1|CF008434

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|32910223|gb|CF015035.1|CF015035

EST:     GTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|18181049|gb|BM382259.1|BM382259

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|18179792|gb|BM381002.1|BM381002

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149016047|gb|EE154219.2|EE154219

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|21809553|gb|BQ667871.1|BQ667871

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|14245417|gb|BG873999.1|BG873999

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|32790878|gb|CD943114.1|CD943114

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGGCA
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAG-CA

EST: gi|32859247|gb|CD998928.1|CD998928

EST:     GGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149015633|gb|EE045427.2|EE045427

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|149014008|gb|EE043524.2|EE043524

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211386325|gb|FL229474.1|FL229474

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGT

EST: gi|91053204|gb|EB163622.1|EB163622

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|8383121|gb|BE056004.1|BE056004

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|211386323|gb|FL229472.1|FL229472

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|29946155|gb|CB816007.1|CB816007

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|32859248|gb|CD998929.1|CD998929

EST:     GGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|32803104|gb|CD955340.1|CD955340

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|91050087|gb|EB160505.1|EB160505

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|7137963|gb|AW499360.1|AW499360

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

EST: gi|21987796|gb|BQ779324.1|BQ779324

EST:     GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACAC                         GGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT
genomic: GAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 289

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 415

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 672

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 366

CTACTGAATGGGTGAAGGGAAAACCAATGGATGAAGTTTTGACAATCAAGAACACgtaagttatc ... tcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ctatcagaatcccttagcaaagaccactgtaacttgttgtgttactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

                          ctgtaac  putative branch site (score: 366)
                                       tgttactcttttcc  putative PPT

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cctcgctgtatttttagggtttggttgttgagatttttctgggcactatcagaatcccttagcaaagaccactgtaacttgttgtgttactcttttccagGGAGATCGCGAAGCACTTGTCCCTTCCACCAGTAAAGCTCCATTGCAGCATGCTTGCCGAGGATGCGATTAAAGCTGCTGTAAAAGACTACGAAGCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - gctgtat
- - - - - - - - - - - - ttgttga
- - - - - - - - - - - - - - - - - ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgttgt

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data

Putative cis-regulatory sequences