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gtgttcacttgcaatttcgttgatactttttcagtattttgttgaaatgccatataatgaaatttgactttacccgtgggcatgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACCGTGATGTACTCATAGAATGTAGAGATGTCCATAAGTCATTTGGAGAGA
species | Zea mays |
transcript | GRMZM5G868168_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|149004790|gb|EE039293.2|EE039293
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|19057652|gb|BM736319.1|BM736319
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|149078033|gb|EE166771.2|EE166771
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|211065956|gb|FK946601.1|FK946601
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|211065957|gb|FK946602.1|FK946602
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|78120174|gb|DV538558.1|DV538558
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCGGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|211380394|gb|FK976874.1|FK976874
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|31350150|gb|CD434507.1|CD434507
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|33467141|gb|CF244190.1|CF244190
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|78103984|gb|DV522402.1|DV522402
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|154130463|gb|EC872173.2|EC872173
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|76931706|gb|DV172823.1|DV172823
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|148986921|gb|EE030732.2|EE030732
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|149080766|gb|EE169831.2|EE169831
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|91048130|gb|EB158548.1|EB158548
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|19436793|gb|BM953203.1|BM953203
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: -TTTGGCTGCAAGGAGTCCTGG-TTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
tttgttgaaatgccatataatgaaatttgactttacccgtgggcatgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACCGTGATGTACTCATAGAATGTAGAGATGTCCATAAGTCATTTGGAGAGA
atttgac putative branch site (score: 80)
atataatgaaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcacttgcaatttcgttgatactttttcagtattttgttgaaatgccatataatgaaatttgactttacccgtgggcatgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACCGTGATGTACTCATAGAATGTAGAGATGTCCATAAGTCATTTGGAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA