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gtgttcacttgcaatttcgttgatactttttcagtattttgttgaaatgccatataatgaaatttgactttacccgtgggcatgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACCGTGATGTACTCATAGAATGTAGAGATGTCCATAAGTCATTTGGAGAGA
species | Zea mays |
transcript | GRMZM5G868168_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|19057652|gb|BM736319.1|BM736319
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|211065957|gb|FK946602.1|FK946602
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACEST: gi|19436793|gb|BM953203.1|BM953203
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
EST: -TTTGGCTGCAAGGAGTCCTGG-TTGGGCAACGTTGACAATCTCCATGAG AGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
genomic: TTTTGGCTGCAAGGAGTCCTGGTTTGGGCAACGTTGACAATCTCCATGAGgtgttcactt ... tgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGAC
tttgttgaaatgccatataatgaaatttgactttacccgtgggcatgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACCGTGATGTACTCATAGAATGTAGAGATGTCCATAAGTCATTTGGAGAGA
atttgac putative branch site (score: 4)
atataatgaaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcacttgcaatttcgttgatactttttcagtattttgttgaaatgccatataatgaaatttgactttacccgtgggcatgtgctctagAGTTCAAGCTTATCTAGGAGCTGGGATTTGAACAGACAGATTGATGATGACCGTGATGTACTCATAGAATGTAGAGATGTCCATAAGTCATTTGGAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA