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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctcattgacaaacaatttcttcatccatgaggcaacttgtttactgcaaccgccatcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGCGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG

Basic information

species Zea mays
transcript GRMZM5G866647_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G866647_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g70300.2 (Oryza sativa), 3'ss of exon 5
----------------gtatctcattgacaaacaatttcttcatccatgagg--------caacttgtttactg-----caaccgccatcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGCGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG
                |||| |||||   || |||  | ||  | |||             | ||| | |  |      ||| || ||||||||||||||||||||||| || |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||||  ||||||||||||||
gtattctcaccagagggtat-tcattatgaagcaaactattagttcattgtaattgttattaccttttcttttagaagtcaatcgtcatcacttgcagGGCTGGAAATCAGGCGCTGTAACCACTTTAGGCCGAGGTGGCAGTGACTTGACTGCTACAACCATTGGTAAAGCCCTGGGGTTGAGAGAAATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatttcttcatccatgaggcaacttgtttactgcaaccgccatcacttgcagGGCTGGAAATCTGGTGCTGTAACTACTTTAGGCCGAGGTGGTAGCGACTTGACTGCTACAACCATTGGTAAAGCCTTGGGACTGAGAGAAATTCAG
                          ttgttta  TA-rich tract