Sequence
atgc intronic sequence ATGC exonic sequencegtaagttattttcccttttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacagTCACGTGGGATCGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCTTCACTTGTGGATATTAATCAAGCTACTGATTTCATTCATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM5G863550_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g05870.1 (Oryza sativa), 3'ss of exon 2
gtaagttattttcccttttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgac-ctaaatgctcctctgctgaaatttacagTCACGTGGGATCGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCTTCACTTGTGGATATTAATCAAGCTACTGATTTCATTCATA
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-----------------------------------------------------tga--cagagtctgatgaaaggttgt---tggctt----------actgcaaattcagt-tatgttcaattggaagtttcttatgacacggaatgctcctctgctgaaattttcagTCTCGTGGGATTGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCCTCACTTGTGGATATTAGTCGAGCTGTTGATTTCATACATA
upper sequence: GRMZM5G863550_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv11s0016g02890.t01 (Vitis vinifera), 3'ss of exon 3
gtaagttattttcccttttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacagTCACGTGGGATCGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCTTCACTTGTGGATATTAATCAAGCTACTGATTTCATTCATA
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----------------------------------------------------------------tcctttg---ctattattccctttaagtatttaaaattttggcttgaac-attcttttttgtggatttatgacctctcccattccattgtttgatggttttcagGCTCATGAGATAGACCACCTGGTAATTCCCACAAGAGATTACCTTTTTGCTCCTTCATTTGTGGATATTAGCCGTGCTGTAGATTTCATTCATA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacagTCACGTGGGATCGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCTTCACTTGTGGATATTAATCAAGCTACTGATTTCATTCATA
acctaaa putative branch site (score: 3)
tgaaattta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttattttcccttttcatgctgaaaaatttatgttgtttcacggatccttaattcaaagtttcattaaaccttgcatatgccaccgggaacagaactgctgacccaatctattttcaatcagaaatacgctgtgacctaaatgctcctctgctgaaatttacagTCACGTGGGATCGATCACCTTGTTATTCCTACAAGAGATTATATGTTTGCTCCTTCACTTGTGGATATTAATCAAGCTACTGATTTCATTCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT