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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taacatatcttggtttggtcaagggtttacttcagttttagcttgcttatttagtttaagatgcaaggtttcttgaaataattgctcttctgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAATGTAAGAATTTATAATAATCTCCCTCTCTT

Basic information

species Zea mays
transcript GRMZM5G862331_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862331_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g52140.2 (Oryza sativa), 3'ss of exon 2
taacatatcttggtttggtcaagggtttacttcagttttagct--tgcttatttagtttaagatgcaaggtttcttgaaataattgctcttctgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAATGTAAGAATTTATAATAATCTCCCTCTCTT
 | |  || ||   ||   ||    || | ||   |  ||| |  |  ||  | |||||    |||||  | |||  |    ||| ||||| ||||||| |||||| || ||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||                             
-acccgatgttctatttcccacattttcagttttctgataggtactagttggtaagtttccattgcaacttctct-aatgctattactcttttgttttgtagGAGGAGATCCTAGCGCGTCTACAGCTGAGGCAAAGGAGCAGGTGGATGCTCGATCTGTGTATGTTGGAAAT-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211468143|gb|FL353003.1|FL353003
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|9566340|gb|BE475849.1|BE475849
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211302411|gb|FL241352.1|FL241352
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211541161|gb|FL236758.1|FL236758
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
EST: gi|211422858|gb|FL241386.1|FL241386
EST:     AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAG                         GAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC
genomic: AGCCGCCGCCCTCCGCGATATGCAGGCCAAGGTCGCCAAGGAGATGCAAGgttgtcttcc ... tgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatttagtttaagatgcaaggtttcttgaaataattgctcttctgttttgcagGAGGTGACCCTAGTGCATCTACAGCTGAGGCAAAGGAGCAGGTGGATGCCCGTTCTGTGTATGTTGGAAATGTAAGAATTTATAATAATCTCCCTCTCTT
                                    ttgctcttctgtttt  CT-rich tract
                       tttcttgaaataatt  TA-rich tract