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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcgtgctctctgtctcgcggtttcggtggatttcggcaagttttgcgttttttttaagtcgaatggtttggtttattcgtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG

Basic information

species Zea mays
transcript GRMZM5G862131_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862131_T01 (Zea mays), 3'ss of exon 2
lower sequence: EDP09748 (Chlamydomonas reinhardtii), 3'ss of exon 2
gtgcgcgtgctctctgtctcgcggtttcggtggatttcggcaagttttgcgttttttttaagtcgaatggtttggtttattcgtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG-------------
              | | | | |    | | ||     || || | | |||| |    |  |   | |      |     | |||   |||||||| || || ||||| || ||||||||||||||| ||||||||||||| || ||||| || |||||   |||||| |||||||| |             
-------------gtatgttgggacggcagcgg-----gggaaatgtagcgtatgagctggggtcatt--ccatgccgccttgtgttcgcagCGCCCGGCATTAGCGCTTCTCCCTCGGAGGAGAACCTGCGCTACTTCAATGTGATGATTCTGGGGCCTCAGCAGTCCCCCTATGAGGGTGGCGTGTTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78082926|gb|DV511319.1|DV511319
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|78082925|gb|DV511318.1|DV511318
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18165915|gb|BM335754.1|BM335754
EST:     ATCATCAAGGAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: ATCATCAAGGAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|19822337|gb|BQ048361.1|BQ048361
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|9733096|gb|BE511848.1|BE511848
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18173095|gb|BM348483.1|BM348483
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|116820228|gb|EC863426.1|EC863426
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|60352429|gb|DN219402.1|DN219402
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|148942557|gb|EC887576.2|EC887576
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|78114365|gb|DV532754.1|DV532754
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|211426152|gb|FL388344.1|FL388344
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18166793|gb|BM336632.1|BM336632
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|32790202|gb|CD942438.1|CD942438
EST:     GAGACTCAGCGGCTGCTCAGCGAGCCAG                         CACCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|32790472|gb|CD942708.1|CD942708
EST:     GAGACTCAGCGGCTGCTCAGCGAGCCAG                         CACCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18174276|gb|BM349664.1|BM349664
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|32164877|gb|CD670195.1|CD670195
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|78022963|gb|DV491350.1|DV491350
EST:     GAGACGCAGCGACTGTTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|148942556|gb|EC887575.2|EC887575
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|19770452|gb|BQ035173.1|BQ035173
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18166853|gb|BM336692.1|BM336692
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|17929639|gb|BM266599.1|BM266599
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|16922154|gb|BM075451.1|BM075451
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|211175698|gb|FL126948.1|FL126948
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|101390924|gb|EB817397.1|EB817397
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|76289737|gb|DV029305.1|DV029305
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|17931855|gb|BM268815.1|BM268815
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|86466356|gb|DY232727.1|DY232727
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|17931228|gb|BM268188.1|BM268188
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|149008218|gb|EE040380.2|EE040380
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|113703909|gb|EE681413.1|EE681413
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|16922067|gb|BM075413.1|BM075413
EST:     AAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|15100538|gb|BI396329.1|BI396329
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|16920505|gb|BM074689.1|BM074689
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|71533810|gb|DR784569.1|DR784569
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18171979|gb|BM347367.1|BM347367
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|18168647|gb|BM338487.1|BM338487
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|60336668|gb|DN203641.1|DN203641
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|32865618|gb|CF005300.1|CF005300
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|17930844|gb|BM267804.1|BM267804
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|6695672|gb|AW288885.1|AW288885
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|211174025|gb|FL126939.1|FL126939
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|93284147|gb|EB676411.1|EB676411
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|15100281|gb|BI396072.1|BI396072
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|78108792|gb|DV527209.1|DV527209
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|20300415|gb|BQ163358.1|BQ163358
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|86466357|gb|DY232728.1|DY232728
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|9733724|gb|BE512476.1|BE512476
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|71326051|gb|DR799712.1|DR799712
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|32865617|gb|CF005299.1|CF005299
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|211175694|gb|FL126944.1|FL126944
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|74244042|gb|DT651956.1|DT651956
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
EST: gi|28985447|gb|CB350644.1|CB350644
EST:     GAGACGCAGCGACTGCTCAGCGAGCCAG                         CGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG
genomic: GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 43 (upstream exon), 49 (downstream exon)
Score: 238

GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 207

GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 196

GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG


Block sizes: 28 (upstream exon), 47 (downstream exon)
Score: 220

GAGACGCAGCGACTGCTCAGCGAGCCAGgtgcgcgtgc ... gtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggcaagttttgcgttttttttaagtcgaatggtttggtttattcgtgcgtgcagCGCCGGGGATCAGCGCGTCGCCCTCGGAGGAGAACATGCGCTACTTCAACGTTATGATCCTTGGGCCGGCGCAGTCGCCCTATGAAG
              ttttttttaagt  TA-rich tract