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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttatatatggctggtctctgttgggaatacctttatgtcattgttcagcctttctaggttatcttagtttctttaaccttattcaattttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG

Basic information

species Zea mays
transcript GRMZM5G862107_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862107_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g20100.1 (Oryza sativa), 3'ss of exon 2
-------ctttatatatggctggtctctgttgggaatacctttatgtcattgttcagcctttctaggttatcttagtttctttaaccttattcaattttgctt-gcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG
        |   | ||||  | || | | ||||||  |  ||  ||| ||   | || ||     ||||| || | ||  |    | ||   |||| ||||   |||||||||||||||||||||||||||||| |||||||||||||| || |||||||| || ||||||||||| ||||||||||||
agcttatatgattgtatgcttagttt-tattgggatgaatttgctgtaatgtattagtctgc---ggttacctgacttgtt----catttggcaatgttgccccgcagGTAATTGGTGGAAACAAAGGAGGTGTGGTAGCTCTTGTGGAGGGCCTTAAGGGATTTGTTCCATTTTCACAAGTGTCATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74236428|gb|DT644342.1|DT644342
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148948413|gb|EC893930.2|EC893930
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148942422|gb|EC887441.2|EC887441
EST:     GGGANAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|15053303|gb|BI358848.1|BI358848
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAAC
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAAC
EST: gi|148967255|gb|EE018456.2|EE018456
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148950615|gb|EC896198.2|EC896198
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|71327391|gb|DR800308.1|DR800308
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148973408|gb|EE024500.2|EE024500
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|89758470|gb|DY687641.1|DY687641
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148969033|gb|EE019745.2|EE019745
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|211456074|gb|FL267263.1|FL267263
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAGGGAG-TGTAGTAGCTCTTTGTG-ATGGGCTTTA
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTT-GTGGATGGGCTTAA
EST: gi|149085338|gb|EE174844.2|EE174844
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|88756836|gb|DY540977.1|DY540977
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148968012|gb|EE019338.2|EE019338
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|76918968|gb|DV167535.1|DV167535
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|74240696|gb|DT648610.1|DT648610
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|76915754|gb|DV166106.1|DV166106
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|31364617|gb|CD448972.1|CD448972
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTTGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148972941|gb|EE023966.2|EE023966
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|76280589|gb|DV020157.1|DV020157
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|15100289|gb|BI396080.1|BI396080
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTTGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|149110692|gb|EE190555.2|EE190555
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148954074|gb|EC899473.2|EC899473
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|13558412|gb|BG549768.1|BG549768
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|31354547|gb|CD438904.1|CD438904
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTTGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148962590|gb|EE013473.2|EE013473
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|71769111|gb|DR967048.1|DR967048
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148997921|gb|EE035909.2|EE035909
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|74241825|gb|DT649739.1|DT649739
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|149080306|gb|EE169331.2|EE169331
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|76932725|gb|DV173133.1|DV173133
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|13237206|gb|BG355220.1|BG355220
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|50327594|gb|CO522720.1|CO522720
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
EST: gi|148987624|gb|EE031498.2|EE031498
EST:     GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAA                         GTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG
genomic: GGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 106

TGATGAAACTTTGATTCTAAGTTTGCAAGCAATTCAGCAAGAACTTGCATGGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 816

TGATGAAACTTTGATTCTAAGTTTGCAAGCAATTCAGCAAGAACTTGCATGGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 57

TGATGAAACTTTGATTCTAAGTTTGCAAGCAATTCAGCAAGAACTTGCATGGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 254

TGATGAAACTTTGATTCTAAGTTTGCAAGCAATTCAGCAAGAACTTGCATGGGAAAGGTGCCGGCAACTTCAGGCCGAAGATGTCGTTGTCACGGGTAAAgtgagtacaa ... ttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagcctttctaggttatcttagtttctttaaccttattcaattttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG
                           ctttaac  putative branch site (score: 254)
                                           ttttgctt  putative PPT
                                   ttattcaatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttatatatggctggtctctgttgggaatacctttatgtcattgttcagcctttctaggttatcttagtttctttaaccttattcaattttgcttgcagGTAATTGGTGGAAACAAAGGAGGTGTAGTAGCTCTTGTGGATGGGCTTAAGGGTTTCGTTCCATTTTCGCAAGTGTCATCG

- - - - - -gctggtc
- - - - - - - - - -ctgttgg