1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtctaacccgccttaattttcttggggttatgttgttgttgttgccgatattctagttttgctgctaactgcaactttttaaatttttatcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGGCTCACAGAGAC
species | Zea mays |
transcript | GRMZM5G856338_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATEST: gi|78089005|gb|DV517398.1|DV517398
genomic: GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgctcac ... tcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGAT
EST: GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATEST: gi|76925365|gb|DV170401.1|DV170401
genomic: GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgctcac ... tcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGAT
EST: GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATEST: gi|211422440|gb|FL453317.1|FL453317
genomic: GAGCATGTGAGGGTTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgctcac ... tcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGAT
EST: TTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATG GATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATEST: gi|211519240|gb|FL430936.1|FL430936
genomic: TTCACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgctcac ... tcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGAT
EST: ACTTGCGTGTTTTACTTGTCATGTAATAGTAATG GATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGAT
genomic: ACTTGCGTGTTCTACTTGTCATGTAATAGTAATGgtatgctcac ... tcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGAT
ccgatattctagttttgctgctaactgcaactttttaaatttttatcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGGCTCACAGAGAC
tgctaac putative branch site (score: 55)
tttttatcttatcc putative PPT
aactttttaaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtctaacccgccttaattttcttggggttatgttgttgttgttgccgatattctagttttgctgctaactgcaactttttaaatttttatcttatccagGATGTAAACTACTATAACAAATTAGAAGATCCAGCAGATGAAGAAAATGATATGCTTGACCTTGCATTTGGGCTCACAGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - tttcttg
- - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - tgttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgcaa