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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgagataccccttttgtggatttatattttataattatgaagcttttgtaataaaatacttctgaaactattgacaacatattcctaaatacatcagGTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGCTATGCTTGCAAGCATAGTGCACATAGTAAATGGTGATTGGGCTTCCGTC

Basic information

species Zea mays
transcript GRMZM5G855200_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G855200_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g56200.2 (Oryza sativa), 3'ss of exon 9
---------------------------------atatgagatacccctttt----------gtggatttatattttataat---tatgaagcttttgtaataaaatacttctgaaactat------------tgacaacatattcctaaatacatcagGTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGCTATGCTTGCAAGCATAGTGCACATAGTAAATGGTGATTGGGCTTCCGTC
                                 ||| || |    | | ||          |  || | || || || | |   | ||| | |||||||||    | | ||||  | | |            |   ||||  ||||||| ||  | |||||||| |||||||||||||| || |||||||||| ||||||||||| ||||||||||||||| || || |||||||||||||| |||||||||||  | 
gttagtgttaatttatctttttatgtacgctctataagaaaatgtcttcttactataatcagcagaatcatgttatacagtgggtctgatgtttttgtaatggttttcctctgtcattctccctttgagcaatagtaacaccttcctaattatgttagGTTTCTTGATTTTGGTTTGCTTTGTATGATGGAGAAGAAACATCAGCATGCTATGCTTGCAAGTATCGTTCACATAGTAAATGGAGATTGGGCTTCTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33467317|gb|CF244366.1|CF244366
EST:     GCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGG                         GTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGC
genomic: GCTGATCCTCATCCTGGTAACTTGCGTTATACTCCTGAAGGCCGTGTTGGgtaagctcta ... aatacatcagGTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgtaataaaatacttctgaaactattgacaacatattcctaaatacatcagGTTTCTAGATTTTGGTTTGCTGTGCATGATGGAGAGGAAACATCAGCGTGCTATGCTTGCAAGCATAGTGCACATAGTAAATGGTGATTGGGCTTCCGTC
                                        tcctaaa  putative branch site (score: 2)
      taataaaatacttct  TA-rich tract