Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcgcttccaatgcctaaacttttattttttttttcaattagcatcttcagttgtcgactaaccaacaaagagcgggtcctttgttgcgccgttgattgattcgtcggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC

Basic information

species Zea mays
transcript GRMZM5G854473_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G854473_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g64680.1 (Oryza sativa), 3'ss of exon 2
gtaag--ctcgcttccaatgcctaaacttttatttttttt-----------ttcaattagcat-cttcagttgtcgactaaccaacaaagagcgggtcctttgttgcgccgttgattgattcgtcggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC
||||   ||| |  ||||   | ||   ||  |    |||           || |||| || | ||||  ||||  || ||| || | |||   | || | ||||  |    || |||||   | |||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||
gtaattcctcacccccaaactccaattgttcttcacctttgtataggagtatttaatttgcttgcttccattgtt-acgaacgaa-agagaagagatcttgtgtttggtgactggttgatcgattggtgtgaagGTGCGGCGCGAGCTACGAGATTGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGCGGCACCGGATGGTGAACACCGCGCTGGCGCCGCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211188921|gb|FL465400.1|FL465400
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061902|gb|FL234616.1|FL234616
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058939|gb|FL234604.1|FL234604
EST:     TCGTGGTGACGGACACGTCCGGAGG                         C
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaag-
EST: gi|211058939|gb|FL234604.1|FL234604
EST:     TCGTGGTGACGGACACGTCCGGAGG                         C
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaag-
EST: gi|26557525|gb|CA829760.1|CA829760
EST:     TCGTGG-GACGGACACGTCCGGAGG                         GTG-GGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061910|gb|FL234624.1|FL234624
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTCGGTGTCGGAGAAGNTCGAGGGGN
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGT-GGTGTCGGAGAAGTTCGAGGGGA
EST: gi|211055957|gb|FL234596.1|FL234596
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061912|gb|FL234626.1|FL234626
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAG
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAG
EST: gi|14243247|gb|BG840915.2|BG840915
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055948|gb|FL234587.1|FL234587
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGASSTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055955|gb|FL234594.1|FL234594
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053003|gb|FL234572.1|FL234572
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|87155571|gb|DY400360.1|DY400360
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|14242717|gb|BG840569.2|BG840569
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055959|gb|FL234598.1|FL234598
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-CTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053006|gb|FL234575.1|FL234575
EST:     CGTGGTGACGGACACGTCCGGGAGG                         GTGTGGCGCGAGCTAC
genomic: CGTGGTGACGGACACGTCCGG-AGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTAC
EST: gi|211058934|gb|FL234599.1|FL234599
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053000|gb|FL234569.1|FL234569
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061911|gb|FL234625.1|FL234625
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053012|gb|FL234581.1|FL234581
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055952|gb|FL234591.1|FL234591
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055953|gb|FL234592.1|FL234592
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-STACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061905|gb|FL234619.1|FL234619
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-STACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211438055|gb|FL453417.1|FL453417
EST:     TCGTGGTGAC-GACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|213173861|gb|FM192173.1|FM192173
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|21987519|gb|BQ779047.1|BQ779047
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|116817550|gb|EC860418.1|EC860418
EST:     CGTGGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: CGT-GGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|32919384|gb|CF024196.1|CF024196
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053007|gb|FL234576.1|FL234576
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055949|gb|FL234588.1|FL234588
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAN-TACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055945|gb|FL234584.1|FL234584
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAS-TACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061900|gb|FL234614.1|FL234614
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-CTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055946|gb|FL234585.1|FL234585
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGAYCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061908|gb|FL234622.1|FL234622
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053014|gb|FL234583.1|FL234583
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058935|gb|FL234600.1|FL234600
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTG
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTG
EST: gi|19351440|gb|BM895957.1|BM895957
EST:     TCG-GGTGACGGACACGTCCGG-GG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061907|gb|FL234621.1|FL234621
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|22521019|gb|BU079830.1|BU079830
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055956|gb|FL234595.1|FL234595
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061903|gb|FL234617.1|FL234617
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAS-TACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061901|gb|FL234615.1|FL234615
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053002|gb|FL234571.1|FL234571
EST:     TCGTGGTGACGGAMACGTCCGGAGG                         GTKTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055947|gb|FL234586.1|FL234586
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-STACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058940|gb|FL234605.1|FL234605
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAS-TACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053010|gb|FL234579.1|FL234579
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058942|gb|FL234607.1|FL234607
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058941|gb|FL234606.1|FL234606
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211050057|gb|FL234567.1|FL234567
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058936|gb|FL234601.1|FL234601
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-STACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053001|gb|FL234570.1|FL234570
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|9794459|gb|BE552767.1|BE552767
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211050058|gb|FL234568.1|FL234568
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-CTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058946|gb|FL234611.1|FL234611
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|15177436|gb|BI398390.1|BI398390
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|9953801|gb|BE640384.1|BE640384
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058947|gb|FL234612.1|FL234612
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|78103806|gb|DV522234.1|DV522234
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058948|gb|FL234613.1|FL234613
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAS-TACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGG
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGG
EST: gi|16918819|gb|BM073909.1|BM073909
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211058945|gb|FL234610.1|FL234610
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAS-TACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061906|gb|FL234620.1|FL234620
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|26559182|gb|CA831417.1|CA831417
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053013|gb|FL234582.1|FL234582
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055954|gb|FL234593.1|FL234593
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211053005|gb|FL234574.1|FL234574
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211055958|gb|FL234597.1|FL234597
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
EST: gi|211061909|gb|FL234623.1|FL234623
EST:     TCGTGGTGACGGACACGTCCGGAGG                         GTGTGGCGCGA-CTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA
genomic: TCGTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 38 (upstream exon), 47 (downstream exon)
Score: 337

GTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 202

GTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC


Block sizes: 28 (upstream exon), 47 (downstream exon)
Score: 181

GTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC


Block sizes: 38 (upstream exon), 47 (downstream exon)
Score: 140

GTGGTGACGGACACGTCCGGAGGgtaagctcgc ... cggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaccaacaaagagcgggtcctttgttgcgccgttgattgattcgtcggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC
                                   attgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagctcgcttccaatgcctaaacttttattttttttttcaattagcatcttcagttgtcgactaaccaacaaagagcgggtcctttgttgcgccgttgattgattcgtcggtgcgaagGTGTGGCGCGAGCTACGAGATCGAGGTGGTGTCGGAGAAGTTCGAGGGGAAGCGGCTGCTGGAGAGGCACCGGATGGTGAACACCGCGCTGGCGTCTCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG