1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctgtactcctccacattctttcacctgtctcctcctcctccgattcaaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAAGCAAGATCCTTGCTGCACTTACCACAG
species | Zea mays |
transcript | GRMZM5G852877_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|78084604|gb|DV512997.1|DV512997
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|84980856|gb|DW531205.1|DW531205
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGTGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|93017382|gb|EB642902.1|EB642902
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|60354253|gb|DN221226.1|DN221226
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|60401298|gb|DN234105.1|DN234105
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
caaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAAGCAAGATCCTTGCTGCACTTACCACAG
ttctcac putative branch site (score: 2)
tttccccttctatat putative PPT
aacaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtactcctccacattctttcacctgtctcctcctcctccgattcaaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAAGCAAGATCCTTGCTGCACTTACCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC