1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgtactcctccacattctttcacctgtctcctcctcctccgattcaaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAAGCAAGATCCTTGCTGCACTTACCACAG
species | Zea mays |
transcript | GRMZM5G852877_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|211429951|gb|FL102243.1|FL102243
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|211429949|gb|FL102241.1|FL102241
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAEST: gi|211429950|gb|FL102242.1|FL102242
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTA
EST: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCT GTGAAGGCTTTCTTCGTCGGAGGCGCTGTTTGTGGGTGATGTCAGTTTACT
genomic: TCCACCGTCAGTTCCTCTATGGCGGCCTCCGCATCGGCTTGTATGAGCCTgtctgtactc ... atacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTT-GTGGGTGATGTCAGTTTACT
caaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAAGCAAGATCCTTGCTGCACTTACCACAG
ttctcac putative branch site (score: 9)
tttccccttctatat putative PPT
aacaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtactcctccacattctttcacctgtctcctcctcctccgattcaaagtgactttctcacaacaataaaggggaatttccccttctatatacttgcagGTGAAGGCTTTCTTCGTCGGAGGCGCTGTTGTGGGTGATGTCAGTTTACTAAGCAAGATCCTTGCTGCACTTACCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC