Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagaacatgcaactttatttgctgtataagtttaaatagttttagctgaaagcttgaatctctctttaattacattgtaatggaaatgaatgcatgcagATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATTCTGATCTTGGTTCTGGTTCAGAGATATTTGATGTAATTGTATGTGGCGG

Basic information

species Zea mays
transcript GRMZM5G851815_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G851815_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os08g32630.1 (Oryza sativa), 3'ss of exon 2
aaagaacatgcaactttatttgctgtataagtttaaatagttttagctgaaagcttgaatctctcttta--attacattgtaatggaaatgaatgcat--gcagATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATTCTGATCTTGGTTCTGGTTCAGAGATATTTGATGTAATTGTATGTGGCGG
   |||   |||||||   |   ||   | |  | |  | || | | |      |  | ||||    ||  ||  |||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||| ||  ||||||  |||| ||||| ||||||||||  ||| |||||||| ||||||||| | || ||||| ||
-gggaaatagcaacttggctacttg---aggactgaggacttattgttttttattacattctcgtagtattatagcattgtgatggaaatgtatgcatatgcagATTCCAAAGTCCCTGAAGTTGTTACTCGAGTCCAAGGGCCATTGGTTGATTATGATCTTGGTGATGGCTCAGAGATCTTTGATGTATTAGTGTGTGGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211349813|gb|FL344382.1|FL344382
EST:     GTTGAAAAGATTGGATCAAATATGGTCTAGTATTTGTGAAGCTCAAGCAG                         ATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATT
genomic: GTTGAAAAGATTGGATCAAATATGGTCTAGTATTTGTGAAGCTCAAGCAGgtacgcctca ... atgcatgcagATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATT
EST: gi|149078164|gb|EE166913.2|EE166913
EST:     GTTGAAAAGATTGGATCAAATATGGTCTAGTATTTGTGAAGCTCAAGCAG                         ATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATT
genomic: GTTGAAAAGATTGGATCAAATATGGTCTAGTATTTGTGAAGCTCAAGCAGgtacgcctca ... atgcatgcagATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgaaagcttgaatctctctttaattacattgtaatggaaatgaatgcatgcagATTCCAAAGTCCCTGAAGTTGTTACTCGGGTTGAAGGGCTGTTGGCTGATTCTGATCTTGGTTCTGGTTCAGAGATATTTGATGTAATTGTATGTGGCGG
                   ctttaat  putative branch site (score: 4)
                    tttaattacattgtaa  TA-rich tract