1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgccataccagtctttttttaatcaaattgctgtattaggcagttcaaccattttattttacttgtgcatctttgttaattctacatgtcatgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT
species | Zea mays |
transcript | GRMZM5G850355_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|32934694|gb|CF039506.1|CF039506
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|211017640|gb|FL189740.1|FL189740
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|40337252|gb|CK371322.1|CK371322
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|22520740|gb|BU079551.1|BU079551
genomic: GGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|5566889|gb|AI881800.1|AI881800
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|14242859|gb|BG840665.2|BG840665
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGEST: gi|211014870|gb|FL189739.1|FL189739
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAAGAAACTGCCTTCCTATTTTEST: gi|211535545|gb|FL366410.1|FL366410
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAA-GAAACTGCCTTC-TATTTT
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|32908069|gb|CF012882.1|CF012882
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|9254141|gb|BE344609.1|BE344609
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|211408164|gb|FL390201.1|FL390201
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|87156656|gb|DY401445.1|DY401445
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|14203539|gb|BG837216.1|BG837216
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: CCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|9461620|gb|BE453822.1|BE453822
genomic: CCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|211156517|gb|FL164231.1|FL164231
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|5456374|gb|AI834064.1|AI834064
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|31355634|gb|CD439991.1|CD439991
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GGGCAGACCTCCCTAGGGATCAAAG CTGCCAATGGTGTATTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|29167732|gb|CB410992.1|CB410992
genomic: GGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGEST: gi|211017651|gb|FL189751.1|FL189751
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTEST: gi|8367928|gb|BE050873.1|BE050873
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGT
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAATGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|14204267|gb|BG837944.1|BG837944
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGEST: gi|12967998|gb|BG264945.1|BG264945
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACTGAGAAGAAACTGCCTTCTATTTTGGEST: gi|211158124|gb|FL164253.1|FL164253
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|211370171|gb|FL333604.1|FL333604
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGEST: gi|32912475|gb|CF017287.1|CF017287
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|211100498|gb|FL307608.1|FL307608
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|26559204|gb|CA831439.1|CA831439
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGGGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|211352174|gb|FL343457.1|FL343457
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGGEST: gi|32906923|gb|CF011736.1|CF011736
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
EST: GCACGCGCTCACTGTTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG CTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTGG
genomic: GCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAGgttcgatctg ... atgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAG
caaccattttattttacttgtgcatctttgttaattctacatgtcatgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT
tgttaat putative branch site (score: 3)
attttattttacttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgccataccagtctttttttaatcaaattgctgtattaggcagttcaaccattttattttacttgtgcatctttgttaattctacatgtcatgtttgcagCTGCCAACGGTGTAGTGATTGCCACCGAGAAGAAACTGCCTTCTATTTTAGTGGATGAAACATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
-gccatac
- - - - - - - - - - - - - attgctg
- - - - - - - - - - - - - - - - - - - - - - tcaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatg