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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gctacatcgctcgcttactcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttggttgatttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG

Basic information

species Zea mays
transcript GRMZM5G850355_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g42320.4 (Oryza sativa), 3'ss of exon 1
gctacatcgctcgcttactcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttggttgatttc-tctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG
  ||  | |||  ||| | | || | | |   ||||||||  |   | | | |  ||| ||||    | || ||   |||||  |  |||||| | |||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| ||||||||||
-gtatgt-gctgccttgcgcctccctcgcccggagatcgggcgtgatctggtgcggtttcggtttcgtcatctgtggtttttgtggcgatttcgtttgcagCCCGTCGGGGAAGCTGGTGCAGATCGAGCACGCGCTCACCGCGGTCGGATCCGGCCAGACGTCCCTCGGGATCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211040642|gb|FL333768.1|FL333768
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211401638|gb|FL329192.1|FL329192
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211408164|gb|FL390201.1|FL390201
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211302509|gb|FL360539.1|FL360539
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211411607|gb|FL320443.1|FL320443
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGBAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|12967998|gb|BG264945.1|BG264945
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|88757728|gb|DY541869.1|DY541869
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211017647|gb|FL189747.1|FL189747
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211362042|gb|FL326986.1|FL326986
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|15427202|gb|BI543024.1|BI543024
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     AATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: AATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211312008|gb|FL324789.1|FL324789
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|8367928|gb|BE050873.1|BE050873
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGGGGAGATTGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211352174|gb|FL343457.1|FL343457
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|28931244|gb|CB334605.1|CB334605
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|31910204|gb|CD651307.1|CD651307
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211535406|gb|FL360267.1|FL360267
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211100498|gb|FL307608.1|FL307608
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32934694|gb|CF039506.1|CF039506
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACTGTTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|5456374|gb|AI834064.1|AI834064
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211218837|gb|FL350383.1|FL350383
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     CCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: CCCCGGTCATGGGTGACAGCCAATACTCCTTCTC-TCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|5456381|gb|AI834071.1|AI834071
EST:     GCCTCGGTCATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|60359658|gb|DN226631.1|DN226631
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211372616|gb|FL325639.1|FL325639
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     TGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: TGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|211028588|gb|FL333340.1|FL333340
EST:     GCCTCGGTAATGGGTGACAGCCAATACTCCTTCTCGCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAG                         CCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC
genomic: GCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 612

CCACGAATCGCCGACACTCCAACCCGGAAGAGCCAACGAGGTGACTCCGCGCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 519

CCACGAATCGCCGACACTCCAACCCGGAAGAGCCAACGAGGTGACTCCGCGCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 316

CCACGAATCGCCGACACTCCAACCCGGAAGAGCCAACGAGGTGACTCCGCGCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 429

CCACGAATCGCCGACACTCCAACCCGGAAGAGCCAACGAGGTGACTCCGCGCCCCGGTCATGGGTGACAGCCAATACTCCTTCTCTCTTACCACTTTCAGgttcgtgctc ... ttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcgtcgttacggtggtttgatgtgaatttttttggttgatttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG
                                      ggttgat  putative branch site (score: 429)
                                            tttctctgc  CT-rich tract
                        atgtgaattttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gctacatcgctcgcttactcgtctcccccatcgagatcggtgggatttttgcgtcgttacggtggtttgatgtgaatttttttggttgatttctctgcagCCCGTCGGGAAAGCTTGTGCAGATAGAGCACGCGCTCACGGCTGTCGGATCCGGGCAGACCTCCCTAGGGATCAAAG

-ctacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgatg