1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtactctttcatgaacctgcttgcatgtttttaaagctttctatataccatataagcttaattgagtgccctggttccctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAG
species | Zea mays |
transcript | GRMZM5G849959_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAG TAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGAEST: gi|76289858|gb|DV029426.1|DV029426
genomic: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAGgtactctttc ... ctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGA
EST: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAG TAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGAEST: gi|71325824|gb|DR799594.1|DR799594
genomic: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAGgtactctttc ... ctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGA
EST: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAG TAGCAAAGGTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGAEST: gi|76912086|gb|DV164569.1|DV164569
genomic: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAGgtactctttc ... ctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGA
EST: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAG TAGCAAAGTTCTAGTGCTGCATGAAACATCTAACATTGAGGTTAGCAAAGA
genomic: GCTGAGGAGGAAAATGATGTTCATGACTGTCTCTACAGTAGAGGCTCGAGgtactctttc ... ctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGA
aagctttctatataccatataagcttaattgagtgccctggttccctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAG
gcttaat putative branch site (score: 102)
ttccctcatttc putative PPT
tatataccatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactctttcatgaacctgcttgcatgtttttaaagctttctatataccatataagcttaattgagtgccctggttccctcatttcagTAGCAAAGTTCTAGTGCTGCATGAACCATCTAACATTGAGGTTAGCAAAGAGAAATTCCAGTGCTTGAGACGTGGCTGCTGGTTAAATGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT