1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
atatcctttttgaactatcactttagccttttccattacatttattatcttcaaaatatccatgtatgaaactttgatggtactctggcatttgagaaaatattttttccttaatataaagaaacGCTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGCAAGCTTGCACTCAGTTAAGTCGACATCTGATGTATTAGACTTGATGGAA
species | Zea mays |
transcript | GRMZM5G845682_T02 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TACAATGAACAAGTTCGTGATTTGCTATCAAATGATATTGCACAGAGAAG GCTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGCEST: gi|61119020|gb|DN559981.1|DN559981
genomic: TACAATGAACAAGTTCGTGATTTGCTATCAAATGATATTGCACAGAGAAGatatcctttt ... ataaagaaacGCTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGC
EST: TACAATGAACAAGTTCGTGATTTGCTATCAAATGATATTGCACAGAGAAG ACTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGC
genomic: TACAATGAACAAGTTCGTGATTTGCTATCAAATGATATTGCACAGAGAAGatatcctttt ... ataaagaaacGCTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGC
actttgatggtactctggcatttgagaaaatattttttccttaatataaagaaacGCTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGCAAGCTTGCACTCAGTTAAGTCGACATCTGATGTATTAGACTTGATGGAA
ttccttaat putative branch site
atttgagaaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcctttttgaactatcactttagccttttccattacatttattatcttcaaaatatccatgtatgaaactttgatggtactctggcatttgagaaaatattttttccttaatataaagaaacGCTTGGGATTTGGAGCACTTCTCAACCCAATGGGCTTGTTGTTCCAGATGCAAGCTTGCACTCAGTTAAGTCGACATCTGATGTATTAGACTTGATGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA