1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgaatatccctccttgtccacctgcgattattgtccgtttgagttccgagagtgttctgctttctgactcggcgcccgccgcggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGGTGAGCAGACTGAACTTGTTAATTATTGACCTGCCCGT
species | Zea mays |
transcript | GRMZM5G836250_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC CEST: gi|148938587|gb|EC882914.2|EC882914
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcag-
EST: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC CEST: gi|78106830|gb|DV525248.1|DV525248
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcag-
EST: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGNCA-CGTTCGTGGACCCTAAEST: gi|50332539|gb|CO527665.1|CO527665
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAG-CAACGTTCGTGGACCCTAA
EST: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGEST: gi|50331045|gb|CO526171.1|CO526171
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGEST: gi|78105897|gb|DV524315.1|DV524315
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
EST: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACC TGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
genomic: TCCTGTCCAACGAGGTGTTCGTCAAGGCCCTCGTCAGCAGCGGTCGCACCgtacgaatat ... cggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAG
gtttgagttccgagagtgttctgctttctgactcggcgcccgccgcggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGGTGAGCAGACTGAACTTGTTAATTATTGACCTGCCCGT
ttctgac putative branch site (score: 85)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgaatatccctccttgtccacctgcgattattgtccgtttgagttccgagagtgttctgctttctgactcggcgcccgccgcggtgtgcagTGCGTCCTTGTGTCCGAGGAGGACGAGGAAGCAACGTTCGTGGACCCTAAGCTGCGTGGAAGGTGAGCAGACTGAACTTGTTAATTATTGACCTGCCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG