Sequence
atgc intronic sequence ATGC exonic sequence...gttctctatggctgagctagagcgggtaataagtgttctttgctatggttttggtggttcgcttgctttgcttggtcattttctgactattctgcaacagGCGAGGAAGGTGTACGAGGAAGGATACGGTGGAGGCCGAGAAAACCGAGTCCACGGTGGCCGACCCCGTGACAGCCATGCCGGCACAGCCGCCAAGGGGC
Basic information
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttttggtggttcgcttgctttgcttggtcattttctgactattctgcaacagGCGAGGAAGGTGTACGAGGAAGGATACGGTGGAGGCCGAGAAAACCGAGTCCACGGTGGCCGACCCCGTGACAGCCATGCCGGCACAGCCGCCAAGGGGC
ttctgac putative branch site (score: 2)
ctattct CT-rich tract
tcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttctctatggctgagctagagcgggtaataagtgttctttgctatggttttggtggttcgcttgctttgcttggtcattttctgactattctgcaacagGCGAGGAAGGTGTACGAGGAAGGATACGGTGGAGGCCGAGAAAACCGAGTCCACGGTGGCCGACCCCGTGACAGCCATGCCGGCACAGCCGCCAAGGGGC
- - - -atggctg
- - - - - - - - - - - - - - - - - - - - tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - -tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgg