Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctagttgaaattgttttcttctagttcagctgtcgtctttcggctgtgatgcctggaacacgaacacgtgcggttcattctaactaatctgcattcacacgtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT

Basic information

species Zea mays
transcript GRMZM5G835323_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835323_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g34589.2 (Oryza sativa), 3'ss of exon 2
gtacgctagttgaaattgttttcttctagttcagctgtcgtctttcggctgtgatgcctggaacacgaacacgtgcggttcattctaactaatctgcattcacacgtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT
||| ||      |  ||||| |||||    |  |   | ||||           ||||||||| |             ||  | || |  |   ||  |||      |  |||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || || |||||||||||||||||||| || ||||||||
gtatgc------atgttgttctcttccctctttgtgatggtctg--------agtgcctggaata-------------tttgtgctcatca---tgttttcctgaacatgtacagATCCCTTTGCTGAGGCCAATGCTGGAGACTCTGGTGCGGCTGCAGGATCAAAGGACTACGTTCATGTACGCATCCAGCAGCGTAATGGCCGTAAGAGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33103516|gb|CF063476.1|CF063476
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211459441|gb|FL427670.1|FL427670
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|213175042|gb|FM189247.1|FM189247
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32840422|gb|CD980103.1|CD980103
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211133228|gb|FL428368.1|FL428368
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33103398|gb|CF063358.1|CF063358
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211270852|gb|FL369235.1|FL369235
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCYTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211502483|gb|FL420282.1|FL420282
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211509586|gb|FL422063.1|FL422063
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|21621225|gb|BQ619231.1|BQ619231
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211337138|gb|FL423320.1|FL423320
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|71767976|gb|DR965913.1|DR965913
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|194716800|gb|FK933959.1|FK933959
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211199602|gb|FL408265.1|FL408265
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211498978|gb|FL377918.1|FL377918
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|50332863|gb|CO527989.1|CO527989
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|8367164|gb|BE050109.1|BE050109
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32934420|gb|CF039232.1|CF039232
EST:     AAATCAAGTTTCCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|60356711|gb|DN223684.1|DN223684
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211059842|gb|FL382530.1|FL382530
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCHA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211105435|gb|FL420496.1|FL420496
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211485134|gb|FL401515.1|FL401515
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211420782|gb|FL379127.1|FL379127
EST:     AATCAAGTTTTCATGTCTGATCTCGACATTCAGATAGCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: AATCAAGTTTTCATGTCTGATCTCGACATTCAGATC-CCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|4730501|gb|AI649667.1|AI649667
EST:     CAATCAAGTTTTCATGGCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGA-GCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|213179245|gb|FM196370.1|FM196370
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|91050722|gb|EB161140.1|EB161140
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagAT-CCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCA
EST: gi|211390688|gb|FL420223.1|FL420223
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33104136|gb|CF064096.1|CF064096
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|71441941|gb|DR822991.1|DR822991
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33104030|gb|CF063990.1|CF063990
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33102696|gb|CF062656.1|CF062656
EST:     CGATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|7227454|gb|AW566095.1|AW566095
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211116916|gb|FL407738.1|FL407738
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32865910|gb|CF005592.1|CF005592
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32855909|gb|CD995590.1|CD995590
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACCTCTGGTGCGGCAGCAGGGTCA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGAC-TCTGGTGCGGCAGCAGGGTCA
EST: gi|211353298|gb|FL394322.1|FL394322
EST:     AATCAAGTTTTCATGTCTGATCTCGACATTACAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: AATCAAGTTTTCATGTCTGATCTCGACATT-CAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211509019|gb|FL391696.1|FL391696
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATTCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAA
EST: gi|211155031|gb|FL401255.1|FL401255
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211111816|gb|FL370871.1|FL370871
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGG
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGG
EST: gi|33104105|gb|CF064065.1|CF064065
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|78080734|gb|DV509146.1|DV509146
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211321884|gb|FL419685.1|FL419685
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211183050|gb|FL425700.1|FL425700
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211178019|gb|FL396087.1|FL396087
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGG
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGG
EST: gi|211387302|gb|FL388829.1|FL388829
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33103702|gb|CF063662.1|CF063662
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211439141|gb|FL388412.1|FL388412
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|193503172|gb|AM937584.1|AM937584
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|7031350|gb|AW461088.1|AW461088
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211294664|gb|FL395563.1|FL395563
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211389988|gb|FL390663.1|FL390663
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211358891|gb|FL423673.1|FL423673
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211423942|gb|FL408408.1|FL408408
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211167944|gb|FL396002.1|FL396002
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33103735|gb|CF063695.1|CF063695
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|7844197|gb|AW787419.1|AW787419
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32858993|gb|CD998674.1|CD998674
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211217949|gb|FL419213.1|FL419213
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211239060|gb|FL421818.1|FL421818
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|8368445|gb|BE051390.1|BE051390
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33103439|gb|CF063399.1|CF063399
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33104070|gb|CF064030.1|CF064030
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211016652|gb|FL375787.1|FL375787
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGNTGGGGACTCTGGTGCGGCAGCAGG
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGG
EST: gi|32916209|gb|CF021021.1|CF021021
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|91871868|gb|EB401825.1|EB401825
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32910303|gb|CF015115.1|CF015115
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|71761988|gb|DR959925.1|DR959925
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32831075|gb|CD970753.1|CD970753
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCA-CAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|21390566|gb|BQ528615.1|BQ528615
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|1298543|gb|W21723.1|W21723
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCNNNNNNNTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|78112906|gb|DV531300.1|DV531300
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211134764|gb|FL389926.1|FL389926
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|4152099|gb|AI372233.1|AI372233
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32915098|gb|CF019910.1|CF019910
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32915212|gb|CF020024.1|CF020024
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32915157|gb|CF019969.1|CF019969
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211071915|gb|FL417754.1|FL417754
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGG
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGG
EST: gi|14204119|gb|BG837796.1|BG837796
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|8367743|gb|BE050688.1|BE050688
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32855907|gb|CD995588.1|CD995588
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211202308|gb|FL411328.1|FL411328
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|60395875|gb|DN228745.1|DN228745
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211013861|gb|FL375761.1|FL375761
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAS-AGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211363247|gb|FL387040.1|FL387040
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33102726|gb|CF062686.1|CF062686
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|33104061|gb|CF064021.1|CF064021
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCATATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCAGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|44682066|gb|CK787114.1|CK787114
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGACAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211493809|gb|FL402018.1|FL402018
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCASSAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|32914506|gb|CF019318.1|CF019318
EST:     AAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|211243486|gb|FL420086.1|FL420086
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATGCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
EST: gi|193503187|gb|AM937599.1|AM937599
EST:     CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCG                         ATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA
genomic: CAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 40 (upstream exon), 49 (downstream exon)
Score: 25

CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 147

CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 188

CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 57

CTCTTGGTGTAGCTTGCCACTCTCACCAATCAAGTTTTCATGTCTGATCTCGACATTCAGATCCCAACTGCCTTCGgtacgctagt ... gtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacacgaacacgtgcggttcattctaactaatctgcattcacacgtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT
                         taactaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgctagttgaaattgttttcttctagttcagctgtcgtctttcggctgtgatgcctggaacacgaacacgtgcggttcattctaactaatctgcattcacacgtacatacagATCCCTTCGCTGAGGCCAATGCTGGGGACTCTGGTGCGGCAGCAGGGTCAAAGGACTACGTACACGTGCGCATCCAGCAGCGTAATGGTCGCAAGAGCCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA