1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cataagtcgtggctcgtgggttgccatttggaaaagggtgggtttttttttgttcacttgaatgatgtgttgattttctgtttcctgtcactgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG
species | Zea mays |
transcript | GRMZM5G834205_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|78116689|gb|DV535076.1|DV535076
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276228|gb|FL230643.1|FL230643
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|89250673|gb|DY622459.1|DY622459
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276231|gb|FL230646.1|FL230646
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|74245588|gb|DT653502.1|DT653502
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|78107222|gb|DV525640.1|DV525640
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: ATTGGGCAAAG-ACATCGAAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATA-GGAGCAGGGAEST: gi|71421501|gb|DR805467.1|DR805467
genomic: ATTGGGCAAAGAACATCG-AAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCA-GGA
EST: TTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAEST: gi|149083865|gb|EE173240.2|EE173240
genomic: TTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagG-AAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGA
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|149079653|gb|EE168650.2|EE168650
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|149088094|gb|EE177262.2|EE177262
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276224|gb|FL230639.1|FL230639
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|76291818|gb|DV031386.1|DV031386
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|88752284|gb|DY536425.1|DY536425
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|76281750|gb|DV021318.1|DV021318
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|76924364|gb|DV169917.1|DV169917
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|71326004|gb|DR799684.1|DR799684
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGACCATCGAAATTTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAGGGATGTGATCTAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|149105966|gb|EE291599.2|EE291599
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276230|gb|FL230645.1|FL230645
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|71428014|gb|DR809064.1|DR809064
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276222|gb|FL230637.1|FL230637
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276225|gb|FL230640.1|FL230640
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|149102742|gb|EE288091.2|EE288091
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|78091791|gb|DV520165.1|DV520165
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|86465690|gb|DY232063.1|DY232063
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCAAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|148938287|gb|EC882591.2|EC882591
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCT-TAAAGAAGTGTATAGGGAGCAGGAGEST: gi|76282168|gb|DV021736.1|DV021736
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|71326005|gb|DR799685.1|DR799685
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|211276226|gb|FL230641.1|FL230641
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|149059924|gb|EE157051.2|EE157051
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|86472431|gb|DY238801.1|DY238801
genomic: GCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAAAACATCAAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|71421504|gb|DR805468.1|DR805468
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|149095623|gb|EE174749.2|EE174749
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGEST: gi|101391434|gb|EB817652.1|EB817652
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
EST: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGG GAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
genomic: GATTGGGCAAAGAACATCGAAATCTGCGAGCTCGTGGCGCAGGATCCTGGgtatgcttgc ... ctgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAG
ttttttgttcacttgaatgatgtgttgattttctgtttcctgtcactgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG
tgttgat putative branch site (score: 161)
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cataagtcgtggctcgtgggttgccatttggaaaagggtgggtttttttttgttcacttgaatgatgtgttgattttctgtttcctgtcactgccaccagGAAAGCGAAGGATGTGATCAAGTCTGTAAAGAAGTGTATAGGGAGCAGGAGCAAGACCACTCAACTCTTTGCTGTTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - -gctcgtg
- - - - - - - - - -gttgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgttt