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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctttctcttgtaagaaagattgttctgtcagcataatttgttttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC

Basic information

species Zea mays
transcript GRMZM5G833389_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 2
tctttctcttgtaagaaagattgttctgtcagcat-aatttgt---tttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
|  |||  |  |  |   | |||  ||      || |||||     |||||  | |  ||   |  |    || |||     ||   ||   ||  | ||  |||| ||||| ||||  |||||| ||||||||||||||||||||||||| || || ||    || ||||||||||||||||| ||||| ||||||||||| |
tgattccatgttgtgttgggttgcccttgtgctatgaatttacgcctttgcctgcactctagtttcagcagttaactctattttttttg---tacat-taaaagGGTGCTCCCGAGAGGTGGAGATTAGTGAAGGCTCATGGAACAGCTGTTGGTCTTCCTAGCGAAGATGACATGGGCAACAGCGAAGTGGGTCACAATGCTC

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G45120.1 (Glycine max), 3'ss of exon 2
tctttctcttgtaagaaagattgttctgtcagcataatttgttttgcaggtatactgtctatatgctttt-----acttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
 | | |      ||| | |||   | ||     | ||          |  | || ||    | ||  ||      | |||  |   | |    | ||||    |||| ||||||||    |||||| | || | ||||||||| || ||||| || || ||| | || |||||||||||||| |||||||||||||||||||| |
-cctccaaaccgaaggaggatacctgtgaggaaacaaca----acaaaaatctattgctagtttgagttagatgaaattaatcaggatttttttttgtactacagGGTGCTCCTGAACGGTGGAGATTGGTCAGGGCTCATGGTACTGCTGTAGGACTTCCAACAGAAGATGACATGGGCAATAGTGAAGTTGGTCACAATGCCC

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G40690.1 (Glycine max), 3'ss of exon 1
---tctttctcttgtaagaaagattgttctgtcagcataatttgttttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
   ||  | | | |||    |   ||||     | ||   ||   |  | |   |    | ||   |   |  | |||  |   | |   || ||| |   |||| || |||||    |||||| | || | ||||||||| || ||||| ||||| ||| | || ||||||||||| || |||||||||||||||||||| |
gtgtccatttttagtagccgacggtgtttca--aacagggttgcctccgaaccgaagtagactggttagatgaaattaatcaggatttttat-tgtcttacagGGTGCCCCTGAACGGTGGAGATTGGTTAGGGCTCATGGTACCGCTGTAGGCCTTCCAACAGAAGATGACATGGGTAATAGTGAAGTTGGTCACAATGCTC

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv08s0056g00200.t01 (Vitis vinifera), 3'ss of exon 1
tctttctcttgtaagaaagattgttct----gtcagcataatttgttttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
  |    | |  ||| |  ||| | ||    | | || | | ||   |      |  |   || |||    | |    |   ||   |  | | |   |   |||| || ||||||||||||||| | || ||||||||||| |  || || || || ||| |||| |||||||||||||||||||||||||| || ||||| |
-ttcatgcattaaaggattattatgcttggtgcctgcctcacttacctcattattgaaggctcaata-atgtctgtcaattgtttttt--attttccttcacagGGTGCCCCTGAGAAATGGAGATTGGTTAAGGCTCATGGGAGTGCAGTAGGGCTTCCAACTGAGGATGACATGGGCAACAGTGAAGTTGGCCATAATGCTC

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ14459 (Selaginella moellendorffii), 3'ss of exon 1
tctttctcttgtaagaaagattgttctgtcagcataatttgttttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
                               | | ||   | |||   | | |       || ||  |  | | | | |    ||   | | | | ||||   || || ||    |||||||| || ||||| |||||| | || || ||||| ||| | || ||||||||||| || ||||| ||||||||||||||  
-------------------------------gtaaaagc-gctttttggatctgg-----atctggatcgattgatcttgt--tgctttttttcttttagACTGCCCCCGATCGGTGGAGACTTGTCAAGGCGCATGGACCTGCCGTCGGCCTTCCAACCGAGGATGACATGGGAAATAGTGAGGTTGGTCACAATGCTT

upper sequence: GRMZM5G833389_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ26058 (Selaginella moellendorffii), 3'ss of exon 1
tctttctcttgtaagaaagattgttctgtcagcataatttgttttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
                           || |      ||| |    | ||    |  || || || | ||  || |  ||          | | | ||||  ||| || ||    |||||||| || ||||| |||||| | || || ||||| ||| | || ||||||||||| || ||||| ||||||||||||||  
---------------------------gtaaaagcgctttttggatccggatctcgatcgat-tgatcttg-ttgctttt----------tttcttttagACCGCCCCCGATCGGTGGAGACTTGTCAAGGCGCATGGACCTGCCGTCGGCCTTCCAACCGAGGATGACATGGGAAATAGTGAGGTTGGTCACAATGCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71330938|gb|DR802276.1|DR802276
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|33102738|gb|CF062698.1|CF062698
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135945|gb|FK961385.1|FK961385
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211136895|gb|FK961399.1|FK961399
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211136889|gb|FK961393.1|FK961393
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135008|gb|FK961373.1|FK961373
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211137829|gb|FK961411.1|FK961411
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211533692|gb|FL186346.1|FL186346
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135007|gb|FK961372.1|FK961372
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135946|gb|FK961386.1|FK961386
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135939|gb|FK961379.1|FK961379
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135943|gb|FK961383.1|FK961383
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135941|gb|FK961381.1|FK961381
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|148961947|gb|EE012741.2|EE012741
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211136902|gb|FK961406.1|FK961406
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211137828|gb|FK961410.1|FK961410
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211136891|gb|FK961395.1|FK961395
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211134061|gb|FK961356.1|FK961356
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211134998|gb|FK961363.1|FK961363
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135009|gb|FK961374.1|FK961374
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135942|gb|FK961382.1|FK961382
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|6526987|gb|AW216215.1|AW216215
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135005|gb|FK961370.1|FK961370
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCYCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135004|gb|FK961369.1|FK961369
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211207538|gb|FL070014.1|FL070014
EST:     ACAACTGTATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211136898|gb|FK961402.1|FK961402
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|33102595|gb|CF062555.1|CF062555
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211136890|gb|FK961394.1|FK961394
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|33103838|gb|CF063798.1|CF063798
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCACGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135000|gb|FK961365.1|FK961365
EST:     ACAACTGCATCCATGTMGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211533691|gb|FL186345.1|FL186345
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC
EST: gi|211135012|gb|FK961377.1|FK961377
EST:     ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAAT                         GGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGT
genomic: ACAACTGCATCCATGTCGCTCAGACTCCTGTCATGGACTCGCTAAAGAATgtgtgtatgc ... tgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC
                        tacttac  putative branch site (score: 1)
                                      tgaaatatgtatatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctttctcttgtaagaaagattgttctgtcagcataatttgttttgcaggtatactgtctatatgcttttacttacccttcagtgaaatatgtatattagGGCGCTCCTGAGAAATGGAGACTAGTGAAGGCTCATGGAACAGCTGTGGGCCTCCCATCTGATGATGACATGGGCAACAGTGAAGTTGGTCACAATGCAC

- - - - - - aagaaaga
- - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - -tgttttg